Evidence map›Paper›PMID 22921400›Full record

ArticleCell reports2012

Identification of cytoplasmic capping targets reveals a role for cap homeostasis in translation and mRNA stability.

Chandrama Mukherjee, Deepak P Patil, Brian A Kennedy, Baskar Bakthavachalu, Ralf Bundschuh, Daniel R Schoenberg

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Review
  3. PLAA/UFD-3 regulates P-bodies through its intrinsic disordered domain.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. The mRNA decapping machinery targetsLife science alliance · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Cancer cells hijack RNA processing to rewrite the message.Biochemical Society transactions · 2022
    Article
  14. Article
  15. Review
  16. Review
  17. From canonical to modified nucleotides: balancing translation and metabolism.Critical reviews in biochemistry and molecular biology · 2020
    Review
  18. Article
  19. The eukaryotic translation initiation factor eIF4E elevates steady-state mProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chandrama MukherjeeCenter for RNA Biology, Ohio State University, Columbus, OH 43210, USA.
Deepak P Patil
Brian A Kennedy
Baskar Bakthavachalu
Ralf Bundschuh
Daniel R Schoenberg
The Ohio State University · US

Funding

Hormonal Regulation of mRNA StabilityR01GM038277 · NIGMS · OHIO STATE UNIVERSITY · PI SCHOENBERG, DANIEL R. · 1987 to 2013
$4.8M
Relationship of Cytoplasmic Capping to Post-transcriptional Gene RegulationR01GM084177 · NIGMS · OHIO STATE UNIVERSITY · PI SCHOENBERG, DANIEL R. · 2010 to 2018
$2.7M
NIGMS NIH HHS R01 GM038277NIGMS NIH HHS R01GM038277NIGMS NIH HHS R01 GM084177NIGMS NIH HHS R01GM084177
6 · The paper itself

Abstract

The notion that decapping leads irreversibly to messenger RNA (mRNA) decay was contradicted by the identification of capped transcripts missing portions of their 5' ends and a cytoplasmic complex that can restore the cap on uncapped mRNAs. In this study, we used accumulation of uncapped transcripts in cells inhibited for cytoplasmic capping to identify the targets of this pathway. Inhibition of cytoplasmic capping results in the destabilization of some transcripts and the redistribution of others from polysomes to nontranslating messenger ribonucleoproteins, where they accumulate in an uncapped state. Only a portion of the mRNA transcriptome is affected by cytoplasmic capping, and its targets encode proteins involved in nucleotide binding, RNA and protein localization, and the mitotic cell cycle. The 3' untranslated regions of recapping targets are enriched for AU-rich elements and microRNA binding sites, both of which function in cap-dependent mRNA silencing. These findings identify a cyclical process of decapping and recapping that we term cap homeostasis.

Indexed as

Cell LineCytoplasmHomeostasisHumansMitosisProtein BiosynthesisRNA CapsRNA StabilityRNA Caps

Identifiers

PMID22921400
PMCPMC3462258
OpenAlexW2006415216

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.