Evidence map›Paper›PMID 22920516›Full record

ArticleAstrobiology2012

Comparative metagenomics of two microbial mats at Cuatro Ciénegas Basin II: community structure and composition in oligotrophic environments.

Germán Bonilla-Rosso, Mariana Peimbert, Luis David Alcaraz, Ismael Hernández, Luis E Eguiarte, Gabriela Olmedo-Alvarez, Valeria Souza

Abstract readComparative Study
In one paragraph

Article in Astrobiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

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  11. Oligotrophic Growth of Nitrate-Dependent FeFrontiers in microbiology · 2022
    Article
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  14. Toward a dynamical understanding of microbial communities.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Germán Bonilla-RossoDepartamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Coyoacán, México D.F., México.
Mariana Peimbert
Luis David Alcaraz
Ismael Hernández
Luis E Eguiarte
Gabriela Olmedo-Alvarez
Valeria Souza

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial mats are self-sustained, functionally complex ecosystems that make good models for the understanding of past and present microbial ecosystems as well as putative extraterrestrial ecosystems. Ecological theory suggests that the composition of these communities might be affected by nutrient availability and disturbance frequency. We characterized two microbial mats from two contrasting environments in the oligotrophic Cuatro Ciénegas Basin: a permanent green pool and a red desiccation pond. We analyzed their taxonomic structure and composition by means of 16S rRNA clone libraries and metagenomics and inferred their metabolic role by the analysis of functional traits in the most abundant organisms. Both mats showed a high diversity with metabolically diverse members and strongly differed in structure and composition. The green mat had a higher species richness and evenness than the red mat, which was dominated by a lineage of Pseudomonas. Autotrophs were abundant in the green mat, and heterotrophs were abundant in the red mat. When comparing with other mats and stromatolites, we found that taxonomic composition was not shared at species level but at order level, which suggests environmental filtering for phylogenetically conserved functional traits with random selection of particular organisms. The highest diversity and composition similarity was observed among systems from stable environments, which suggests that disturbance regimes might affect diversity more strongly than nutrient availability, since oligotrophy does not appear to prevent the establishment of complex and diverse microbial mat communities. These results are discussed in light of the search for extraterrestrial life.

Indexed as

EnvironmentEnvironmental MicrobiologyBacteriaBacterial ProteinsGene LibraryGenes, BacterialGenetic MarkersGeographyLikelihood FunctionsMetagenomeMetagenomicsMexicoMicrobial ConsortiaPhylogenyPrincipal Component AnalysisPseudomonasBacterial ProteinsGenetic MarkersRNA, Ribosomal, 16S

Identifiers

PMID22920516
PMCPMC3426889

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.