Evidence map›Paper›PMID 22920238›Full record

ArticleBMC plant biology2012

Temporal and spatial expression of polygalacturonase gene family members reveals divergent regulation during fleshy fruit ripening and abscission in the monocot species oil palm.

Peerapat Roongsattham, Fabienne Morcillo, Chatchawan Jantasuriyarat, Maxime Pizot, Steven Moussu, Dasuni Jayaweera, Myriam Collin, Zinnia H Gonzalez-Carranza, Philippe Amblard, James W Tregear and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 55 citations in OpenAlex.

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  18. Genome-Wide Identification of Mango (Frontiers in plant science · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Peerapat RoongsatthamInstitut de Recherche pour le Développement, IRD Centre de Montpellier, IRD/CIRAD Palm Development Group, DIADE 911 avenue agropolis BP 64501, 34394 Montpellier cedex 5, France.
Fabienne Morcillo
Chatchawan Jantasuriyarat
Maxime Pizot
Steven Moussu
Dasuni Jayaweera
Myriam Collin
Zinnia H Gonzalez-Carranza
Philippe Amblard
James W Tregear
Somvong Tragoonrung
Jean-Luc Verdeil
Timothy J Tranbarger
Institut de Recherche pour le Développement · BJCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRUniversity of Nottingham · GBKasetsart University · THNational Center for Genetic Engineering and Biotechnology · TH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCell separation that occurs during fleshy fruit abscission and dry fruit dehiscence facilitates seed dispersal, the final stage of plant reproductive development. While our understanding of the evolutionary context of cell separation is limited mainly to the eudicot model systems tomato and Arabidopsis, less is known about the mechanisms underlying fruit abscission in crop species, monocots in particular. The polygalacturonase (PG) multigene family encodes enzymes involved in the depolymerisation of pectin homogalacturonan within the primary cell wall and middle lamella. PG activity is commonly found in the separation layers during organ abscission and dehiscence, however, little is known about how this gene family has diverged since the separation of monocot and eudicots and the consequence of this divergence on the abscission process.

resultsThe objective of the current study was to identify PGs responsible for the high activity previously observed in the abscission zone (AZ) during fruit shedding of the tropical monocot oil palm, and to analyze PG gene expression during oil palm fruit ripening and abscission. We identified 14 transcripts that encode PGs, all of which are expressed in the base of the oil palm fruit. The accumulation of five PG transcripts increase, four decrease and five do not change during ethylene treatments that induce cell separation. One PG transcript (EgPG4) is the most highly induced in the fruit base, with a 700-5000 fold increase during the ethylene treatment. In situ hybridization experiments indicate that the EgPG4 transcript increases preferentially in the AZ cell layers in the base of the fruit in response to ethylene prior to cell separation.

conclusionsThe expression pattern of EgPG4 is consistent with the temporal and spatial requirements for cell separation to occur during oil palm fruit shedding. The sequence diversity of PGs and the complexity of their expression in the oil palm fruit tissues contrast with data from tomato, suggesting functional divergence underlying the ripening and abscission processes has occurred between these two fruit species. Furthermore, phylogenetic analysis of EgPG4 with PGs from other species suggests some conservation, but also diversification has occurred between monocots and eudicots, in particular between dry and fleshy fruit species.

Indexed as

Gene Expression Regulation, PlantMultigene FamilyArecaceaeEthylenesFruitGene Expression ProfilingGene Expression Regulation, EnzymologicGenes, PlantIn Situ HybridizationMolecular Sequence DataPalm OilPhylogenyPlant OilsPolygalacturonaseProtein Structure, TertiaryRNA, MessengerethyleneEthylenesPalm OilPlant OilsPolygalacturonaseRNA, Messenger

Identifiers

PMID22920238
PMCPMC3546427
OpenAlexW2077833259

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.