Evidence map›Paper›PMID 22919639›Full record

ArticleFrontiers in cellular and infection microbiology2012

Evolutionary blueprint for host- and niche-adaptation in Staphylococcus aureus clonal complex CC30.

Martin J McGavin, Benjamin Arsic, Nicholas N Nickerson

Open access · goldAbstract readComparative Study
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

  1. Decoding the evolutionary history of ST30Frontiers in microbiology · 2025
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  2. Genomic profiling of methicillin-sensitiveFrontiers in microbiology · 2024
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  3. Review
  4. Identification ofVirulence · 2023
    Article
  5. Article
  6. Major Molecular Factors Related toFrontiers in immunology · 2022
    Review
  7. Article
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  11. Article
  12. Article
  13. Article
  14. Mutation of Agr Is Associated with the Adaptation ofFrontiers in cellular and infection microbiology · 2018
    Article
  15. Article
  16. Frontiers in cellular and infection microbiology · 2018
    Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Martin J McGavinDepartment of Microbiology, Schulich School of Medicine and Dentistry, Siebens Drake Research Institute and Centre for Human Immunology, University of Western Ontario, London ON, Canada. martin.mcgavin@ schulich.uwo.ca
Benjamin Arsic
Nicholas N Nickerson
Western University · CAUniversity of Guelph · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Staphylococcus aureus clonal complex CC30 has caused infectious epidemics for more than 60 years, and, therefore, provides a model system to evaluate how evolution has influenced the disease potential of closely related strains. In previous multiple genome comparisons, phylogenetic analyses established three major branches that evolved from a common ancestor. Clade 1, comprised of historic pandemic phage type 80/81 methicillin susceptible S. aureus (MSSA), and Clade 2 comprised of contemporary community acquired methicillin resistant S. aureus (CA-MRSA) were hyper-virulent in murine infection models. Conversely, Clade 3 strains comprised of contemporary hospital associated MRSA (HA-MRSA) and clinical MSSA exhibited attenuated virulence, due to common single nucleotide polymorphisms (SNP's) that abrogate production of α-hemolysin Hla, and interfere with signaling of the accessory gene regulator agr. We have now completed additional in silico genome comparisons of 15 additional CC30 genomes in the public domain, to assess the hypothesis that Clade 3 has evolved to favor niche adaptation. In addition to SNP's that influence agr and hla, other common traits of Clade 3 include tryptophan auxotrophy due to a di-nucleotide deletion within trpD, a premature stop codon within isdH encoding an immunogenic cell surface protein involved in iron acquisition, loss of a genomic toxin-antitoxin (TA) addiction module, acquisition of S. aureus pathogenicity islands SaPI4, and SaPI2 encoding toxic shock syndrome toxin tst, and increased copy number of insertion sequence ISSau2, which appears to target transcription terminators. Compared to other Clade 3 MSSA, S. aureus MN8, which is associated with Staphylococcal toxic shock syndrome, exhibited a unique ISSau2 insertion, and enhanced production of toxic shock syndrome toxin encoded by SaPI2. Cumulatively, our data support the notion that Clade 3 strains are following an evolutionary blueprint toward niche-adaptation.

Indexed as

Adaptation, BiologicalEvolution, MolecularAnimalsBacterial ProteinsBacterial ToxinsComputational BiologyGenome, BacterialGenomic IslandsGenotypeHumansInterspersed Repetitive SequencesRecombination, GeneticStaphylococcal InfectionsStaphylococcus aureusVirulence FactorsBacterial ProteinsBacterial ToxinsVirulence Factorsevolutioninsertion sequencepathoadaptationpathogenicity islandpseudogeneStaphylococcus aureustoxin-antitoxin addiction modulevirulence

Identifiers

PMID22919639
PMCPMC3417553
OpenAlexW2067784405

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.