ArticlePloS one2012
De novo sequencing and characterization of the floral transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae).
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.
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79 citing papers in PubMed, 127 citations in OpenAlex.
- Comprehensive characterization of theFrontiers in plant science · 2026Article
- Development and Future Prospects of Bamboo Gene Science.International journal of molecular sciences · 2025Review
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- Silver nanoparticle-induced in vitro flowering in Dendrocalamus strictus (Roxb.) nees and genetic fidelity assessment of regenerants using molecular markers.Molecular biology reports · 2024Article
- Analysis on morphological characteristics and identification of candidate genes during the flowering development of alfalfa.Frontiers in plant science · 2024Article
- NBLAST: a graphical user interface-based two-way BLAST software with a dot plot viewer.Genomics & informatics · 2022Article
- Transcriptome and Coexpression Network Analyses Provide In-Sights into the Molecular Mechanisms of Hydrogen Cyanide Synthesis during Seed Development in Common Vetch (International journal of molecular sciences · 2022Article
- Comparative phylogenomic analyses and co-expression gene network reveal insights in flowering time and aborted meiosis in woody bamboo,Frontiers in plant science · 2022Article
- Comparative transcriptome between male fertile and male sterile alfalfa (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Identification and functional characterization of two bamboo FD gene homologs having contrasting effects on shoot growth and flowering.Scientific reports · 2021Article
- Complementary Transcriptome and Proteome Analyses Provide Insight into the Floral Transition in Bamboo (International journal of molecular sciences · 2020Article
- The Bamboo Flowering Cycle Sheds Light on Flowering Diversity.Frontiers in plant science · 2020Review
- Comparative transcriptomic analysis of the flower induction and development of the Lei bamboo (Phyllostachys violascens).BMC bioinformatics · 2019Article
- Morphological dissection and cellular and transcriptome characterizations of bamboo pith cavity formation reveal a pivotal role of genes related to programmed cell death.Plant biotechnology journal · 2019Article
- Article
- Identification of cordycepin biosynthesis-related genes through de novo transcriptome assembly and analysis inRoyal Society open science · 2018Article
- Overexpression of PvCO1, a bamboo CONSTANS-LIKE gene, delays flowering by reducing expression of the FT gene in transgenic Arabidopsis.BMC plant biology · 2018Article
- Transcriptional alterations during proliferation and lignification in Phyllostachys nigra cells.Scientific reports · 2018Article
- Whole-Genome Comparison Reveals Divergent IR Borders and Mutation Hotspots in Chloroplast Genomes of Herbaceous Bamboos (Bambusoideae: Olyreae).Molecules (Basel, Switzerland) · 2018Article
- Identification, characterization and gene expression analyses of important flowering genes related to photoperiodic pathway in bamboo.BMC genomics · 2018Article
19 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundTranscriptome sequencing can be used to determine gene sequences and transcript abundance in non-model species, and the advent of next-generation sequencing (NGS) technologies has greatly decreased the cost and time required for this process. Transcriptome data are especially desirable in bamboo species, as certain members constitute an economically and culturally important group of mostly semelparous plants with remarkable flowering features, yet little bamboo genomic research has been performed. Here we present, for the first time, extensive sequence and transcript abundance data for the floral transcriptome of a key bamboo species, Dendrocalamus latiflorus, obtained using the Illumina GAII sequencing platform. Our further goal was to identify patterns of gene expression during bamboo flower development.
resultsApproximately 96 million sequencing reads were generated and assembled de novo, yielding 146,395 high quality unigenes with an average length of 461 bp. Of these, 80,418 were identified as putative homologs of annotated sequences in the public protein databases, of which 290 were associated with the floral transition and 47 were related to flower development. Digital abundance analysis identified 26,529 transcripts differentially enriched between two developmental stages, young flower buds and older developing flowers. Unigenes found at each stage were categorized according to their putative functional categories. These sequence and putative function data comprise a resource for future investigation of the floral transition and flower development in bamboo species.
conclusionsOur results present the first broad survey of a bamboo floral transcriptome. Although it will be necessary to validate the functions carried out by these genes, these results represent a starting point for future functional research on D. latiflorus and related species.
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