Evidence map›Paper›PMID 22915785›Full record

ArticleJournal of radiation research2012

Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation.

Reem Yunis, Huguette Albrecht, Karen M Kalanetra, Shiquan Wu, David M Rocke

Abstract read
In one paragraph

Article in Journal of radiation research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. -Omics potential of in vitro skin models for radiation exposure.Cellular and molecular life sciences : CMLS · 2022
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Reem YunisDepartment of Public Health Sciences, University of California at Davis School of Medicine, One Shields Avenue, Davis, CA 95616, USA.
Huguette Albrecht
Karen M Kalanetra
Shiquan Wu
David M Rocke

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
UC Davis Clinical and Translational Science CenterUL1TR000002 · NCATS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BERGLUND, LARS F · 2012 to 2015
$12.2M
Molecular mechanisms and novel therapeutic approaches to combined radiation and bR33AI080604 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ISSEROFF, ROSLYN RIVKAH, ROCKE, DAVID M. · 2011 to 2013
$1.2M
Methods for Analysis of High Throughput Assay DataR01HG003352 · NHGRI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ROCKE, DAVID M. · 2006 to 2008
$658k
Molecular mechanisms and novel therapeutic approaches to combined radiation and bR21AI080604 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI ISSEROFF, ROSLYN RIVKAH, ROCKE, DAVID M. · 2008 to 2009
$426k
NCATS NIH HHS UL1 TR000002NCI NIH HHS P30 CA093373NHGRI NIH HHS R01 HG003352
6 · The paper itself

Abstract

This study aimed at characterizing the genomic response to low versus moderate doses of ionizing radiation (LDIR versus MDIR) in a three-dimensional (3D) skin model, which exhibits a closer tissue complexity to human skin than monolayer cell cultures. EpiDermFT skin plugs were exposed to 0, 0.1 and 1 Gy doses of X-rays and harvested at 5 min, 3, 8 and 24 h post-irradiation (post-IR). RNA was interrogated for global gene expression alteration. Our results show that MDIR modulated a larger number of genes over the course of 24 h compared to LDIR. However, immediately and throughout the first 3h post-IR, LDIR modulated a larger number of genes than MDIR, mostly associated with cell-cell signaling and survival promotion. Significant modulation of pathways was detected only at 3 h post-IR in MDIR with induction of genes promoting apoptosis. Collectively, the data show different dynamics in the response to LDIR versus MDIR, especially in cell-cycle distribution. LDIR-exposed tissues showed signs of attempted cell-cycle re-entry as early as 3 h post-IR, but were arrested beyond 8 h at the G1/S checkpoint. At 24 h, cells appeared to accumulate at the G2/M checkpoint. MDIR-exposed tissues did not exhibit a prolonged G1/S arrest but rather a prolonged G2/M arrest, which was sustained at least up to 24 h. By 24 h cells exhibited signs of recovery in both LDIR- and MDIR-exposed tissues. In summary, the most pronounced difference in the initial cellular response to LDIR versus MDIR is the promotion of protection and survival in LDIR versus the promotion of apoptosis in MDIR.

Indexed as

Skin, ArtificialGene Expression RegulationHumansOrgan Culture TechniquesProteomeRadiation DosageSkinProteome

Identifiers

PMID22915785
PMCPMC3483859

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.