Evidence map›Paper›PMID 22913516›Full record

ArticleThe FEBS journal2012

Structural determination of the phosphorylation domain of the ryanodine receptor.

Parveen Sharma, Noboru Ishiyama, Usha Nair, Wenping Li, Aiping Dong, Tetsuaki Miyake, Aaron Wilson, Tim Ryan, David H MacLennan, Thomas Kislinger and 3 more

Abstract read
In one paragraph

Article in The FEBS journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
  2. Targeting p21-activated kinase 1 for development of a novel anti-arrhythmic drug class.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  3. Molecular mechanism of the severe MH/CCD mutation Y522S in skeletal ryanodine receptor (RyR1) by cryo-EM.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Review
  5. Article
  6. Review
  7. Regulatory mechanisms of ryanodine receptor/CaJournal of muscle research and cell motility · 2021
    Review
  8. Review
  9. Review
  10. Article
  11. Review
  12. Review
  13. CaTrends in biochemical sciences · 2017
    Review
  14. Article
  15. Article
  16. Structures of the colossal RyR1 calcium release channel.Current opinion in structural biology · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Parveen SharmaDepartment of Physiology, University of Toronto, Toronto, Ontario, Canada.
Noboru Ishiyama
Usha Nair
Wenping Li
Aiping Dong
Tetsuaki Miyake
Aaron Wilson
Tim Ryan
David H MacLennan
Thomas Kislinger
Mitsuhiko Ikura
Sirano Dhe-Paganon
Anthony O Gramolini
University of Toronto · CAOntario Institute for Cancer Research · CAUniversity Health Network · CA

Funding

CIHR 84267-1CIHR MOP-3399CIHR MOP-84267Wellcome Trust
6 · The paper itself

Abstract

The ryanodine receptor (RyR) is a large, homotetrameric sarcoplasmic reticulum membrane protein that is essential for Ca(2+) cycling in both skeletal and cardiac muscle. Genetic mutations in RyR1 are associated with severe conditions including malignant hyperthermia (MH) and central core disease. One phosphorylation site (Ser 2843) has been identified in a segment of RyR1 flanked by two RyR motifs, which are found exclusively in all RyR isoforms as closely associated tandem (or paired) motifs, and are named after the protein itself. These motifs also contain six known MH mutations. In this study, we designed, expressed and purified the tandem RyR motifs, and show that this domain contains a putative binding site for the Ca(2+)/calmodulin-dependent protein kinase β isoform. We present a 2.2 Å resolution crystal structure of the RyR domain revealing a two-fold, symmetric, extended four-helix bundle stabilized by a β sheet. Using mathematical modelling, we fit our crystal structure within a tetrameric electron microscopy (EM) structure of native RyR1, and propose that this domain is localized in the RyR clamp region, which is absent in its cousin protein inositol 1,4,5-trisphosphate receptor.

Indexed as

Protein Structure, TertiaryAmino Acid MotifsAmino Acid SequenceAnimalsBinding SitesBlotting, WesternCalcium-Calmodulin-Dependent Protein Kinase Type 2Cryoelectron MicroscopyCrystallography, X-RayHEK293 CellsHumansModels, MolecularMolecular Sequence DataMutationPhosphorylationProtein BindingCalcium-Calmodulin-Dependent Protein Kinase Type 2Protein IsoformsRyanodine Receptor Calcium Release Channel

Identifiers

PMID22913516
PMCPMC3712973
OpenAlexW2051340899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.