ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012
Comparative genome analysis between Aspergillus oryzae strains reveals close relationship between sites of mutation localization and regions of highly divergent genes among Aspergillus species.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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Who cites it
20 citing papers in PubMed.
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- Strategies for the Enhancement of Secondary Metabolite Production via Biosynthesis Gene Cluster Regulation inJournal of fungi (Basel, Switzerland) · 2024Review
- The postbiotic potential ofFrontiers in microbiology · 2024Review
- CRISPR/Cas9 improves targeted knock-in efficiency inBiotechnology notes (Amsterdam, Netherlands) · 2024Article
- Transcriptomic analysis reveals Aspergillus oryzae responds to temperature stress by regulating sugar metabolism and lipid metabolism.PloS one · 2022Article
- Authentication of Aspergillus parasiticus strains in the genome database of the National Center for Biotechnology Information.BMC research notes · 2021Article
- Feasibility study of on-site solid-state enzyme production byBiotechnology for biofuels · 2020Article
- Molecular Analysis of S-morphology Aflatoxin Producers From the United States Reveals Previously Unknown Diversity and Two New Taxa.Frontiers in microbiology · 2020Article
- Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019Article
- Functional Genomics ofMicroorganisms · 2019Review
- Safety of the fungal workhorses of industrial biotechnology: update on the mycotoxin and secondary metabolite potential of Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei.Applied microbiology and biotechnology · 2018Review
- Genomic and transcriptomic comparison of Aspergillus oryzae strains: a case study in soy sauce koji fermentation.Journal of industrial microbiology & biotechnology · 2018Article
- Transcriptome analysis of different growth stages of Aspergillus oryzae reveals dynamic changes of distinct classes of genes during growth.BMC microbiology · 2018Article
- Phylogenomic evolutionary surveys of subtilase superfamily genes in fungi.Scientific reports · 2017Article
- Contrasting Genomic Diversity in Two Closely Related Postharvest Pathogens: Penicillium digitatum and Penicillium expansum.Genome biology and evolution · 2015Article
- Motif-independent de novo detection of secondary metabolite gene clusters-toward identification from filamentous fungi.Frontiers in microbiology · 2015Review
- Motif-independent prediction of a secondary metabolism gene cluster using comparative genomics: application to sequenced genomes of Aspergillus and ten other filamentous fungal species.DNA research : an international journal for rapid publication of reports on genes and genomes · 2014Article
- A molecular and bioinformatic study on the ochratoxin A (OTA)-producing Aspergillus affinis (section Circumdati).Mycotoxin research · 2014Article
- Article
- Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.PloS one · 2013Article
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Authors and funding
17 authors.
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Abstract
Aspergillus oryzae has been utilized for over 1000 years in Japan for the production of various traditional foods, and a large number of A. oryzae strains have been isolated and/or selected for the effective fermentation of food ingredients. Characteristics of genetic alterations among the strains used are of particular interest in studies of A. oryzae. Here, we have sequenced the whole genome of an industrial fungal isolate, A. oryzae RIB326, by using a next-generation sequencing system and compared the data with those of A. oryzae RIB40, a wild-type strain sequenced in 2005. The aim of this study was to evaluate the mutation pressure on the non-syntenic blocks (NSBs) of the genome, which were previously identified through comparative genomic analysis of A. oryzae, Aspergillus fumigatus, and Aspergillus nidulans. We found that genes within the NSBs of RIB326 accumulate mutations more frequently than those within the SBs, regardless of their distance from the telomeres or of their expression level. Our findings suggest that the high mutation frequency of NSBs might contribute to maintaining the diversity of the A. oryzae genome.
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