Evidence map›Paper›PMID 22911627›Full record

ArticlePlant physiology2012

Characterization of the fungal gibberellin desaturase as a 2-oxoglutarate-dependent dioxygenase and its utilization for enhancing plant growth.

Anjanabha Bhattacharya, Sofia Kourmpetli, Dennis A Ward, Stephen G Thomas, Fan Gong, Stephen J Powers, Esther Carrera, Benjamin Taylor, Francisco Nuñez de Caceres Gonzalez, Bettina Tudzynski and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

  1. International journal of molecular sciences · 2025
    Article
  2. Article
  3. Review
  4. LcSAO1, an Unconventional DOXB Clade 2OGD Enzyme fromInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Unraveling the Genome Sequence of Plant Growth PromotingJournal of fungi (Basel, Switzerland) · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. A Century of Gibberellin Research.Journal of plant growth regulation · 2015
    Review
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Anjanabha BhattacharyaPlant and Crop Sciences Division, School of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough LE12 5RD, United Kingdom.
Sofia Kourmpetli
Dennis A Ward
Stephen G Thomas
Fan Gong
Stephen J Powers
Esther Carrera
Benjamin Taylor
Francisco Nuñez de Caceres Gonzalez
Bettina Tudzynski
Andrew L Phillips
Michael R Davey
Peter Hedden
University of Nottingham · GBRothamsted Research · GB

Funding

Biotechnology and Biological Sciences Research Council BB/E006922/1Biotechnology and Biological Sciences Research Council BBS/E/C/00004162Biotechnology and Biological Sciences Research Council BBS/E/C/00004951Biotechnology and Biological Sciences Research Council BBS/E/C/00004954
6 · The paper itself

Abstract

The biosynthesis of gibberellic acid (GA(3)) by the fungus Fusarium fujikuroi is catalyzed by seven enzymes encoded in a gene cluster. While four of these enzymes are characterized as cytochrome P450 monooxygenases, the nature of a fifth oxidase, GA(4) desaturase (DES), is unknown. DES converts GA(4) to GA(7) by the formation of a carbon-1,2 double bond in the penultimate step of the pathway. Here, we show by expression of the des complementary DNA in Escherichia coli that DES has the characteristics of a 2-oxoglutarate-dependent dioxygenase. Although it has low amino acid sequence homology with known 2-oxoglutarate-dependent dioxygenases, putative iron- and 2-oxoglutarate-binding residues, typical of such enzymes, are apparent in its primary sequence. A survey of sequence databases revealed that homologs of DES are widespread in the ascomycetes, although in most cases the homologs must participate in non-gibberellin (GA) pathways. Expression of des from the cauliflower mosaic virus 35S promoter in the plant species Solanum nigrum, Solanum dulcamara, and Nicotiana sylvestris resulted in substantial growth stimulation, with a 3-fold increase in height in S. dulcamara compared with controls. In S. nigrum, the height increase was accompanied by a 20-fold higher concentration of GA(3) in the growing shoots than in controls, although GA(1) content was reduced. Expression of des was also shown to partially restore growth in plants dwarfed by ectopic expression of a GA 2-oxidase (GA-deactivating) gene, consistent with GA(3) being protected from 2-oxidation. Thus, des has the potential to enable substantial growth increases, with practical implications, for example, in biomass production.

Indexed as

Agrobacterium tumefaciensCaulimovirusChromatography, High Pressure LiquidCloning, MolecularDatabases, GeneticDNA, ComplementaryEnzyme AssaysEscherichia coliFungal ProteinsFusariumGenetic VectorsGibberellinsKetoglutaric AcidsMixed Function OxygenasesMolecular Sequence DataNicotianaDNA, ComplementaryFungal Proteinsgibberellic acidGibberellinsKetoglutaric AcidsMixed Function Oxygenases

Identifiers

PMID22911627
PMCPMC3461559
OpenAlexW2018836030

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.