Evidence map›Paper›PMID 22909777›Full record

ArticleACS chemical biology2012

Selective penicillin-binding protein imaging probes reveal substructure in bacterial cell division.

Ozden Kocaoglu, Rebecca A Calvo, Lok-To Sham, Loralyn M Cozy, Bryan R Lanning, Samson Francis, Malcolm E Winkler, Daniel B Kearns, Erin E Carlson

Erratum issuedAbstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. ACS infectious diseases · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. The bacterial tyrosine kinase system CpsBCD governs the length of capsule polymers.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  12. Article
  13. Article
  14. Investigating β-Lactam Drug Targets inACS infectious diseases · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Ozden KocaogluDepartment of Chemistry, Indiana University, Bloomington, Indiana 47405, United States.
Rebecca A Calvo
Lok-To Sham
Loralyn M Cozy
Bryan R Lanning
Samson Francis
Malcolm E Winkler
Daniel B Kearns
Erin E Carlson
Indiana University Bloomington · US

Funding

TRAINING IN GENETICST32GM007757 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KUMAR, JUSTIN P · 1985 to 2014
$8.1M
The mechanism of bistable motility gene expression in Bacillus subtilis.R01GM093030 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI KEARNS, DANIEL B · 2010 to 2018
$2.6M
Targeted natural product diversification to identify novel antibacterial agentsDP2OD008592 · OD · UNIVERSITY OF MINNESOTA · PI CARLSON, ERIN ELIZABETH · 2011 to 2011
$2.2M
Acquisition of a DeltaVision OMX Super-Resolution Imaging SystemS10RR028697 · NCRR · INDIANA UNIVERSITY INDIANAPOLIS · PI WALCZAK, CLAIRE E · 2010 to 2010
$1.2M
Innovative Technologies for Metabolite Profiling and Natural Products DiscoveryR00GM082983 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI CARLSON, ERIN ELIZABETH · 2008 to 2010
$744k
Roles of Phosphate Uptake in Pneumococcal Antibiotic Resistance and VirulenceR21AI095814 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI WINKLER, MALCOLM E. · 2012 to 2013
$423k
NCRR NIH HHS S10 RR028697NCRR NIH HHS S10RR028697-01NIAID NIH HHS AI095814NIAID NIH HHS R21 AI095814NIGMS NIH HHS GM093030NIGMS NIH HHS R00 GM082983NIGMS NIH HHS R00GM82983NIGMS NIH HHS R01 GM093030NIGMS NIH HHS T32 GM007757NIGMS NIH HHS T32GM007757NIH HHS DP2 OD008592NIH HHS DP2OD008592
6 · The paper itself

Abstract

The peptidoglycan cell wall is a common target for antibiotic therapy, but its structure and assembly are only partially understood. Peptidoglycan synthesis requires a suite of penicillin-binding proteins (PBPs), the individual roles of which are difficult to determine because each enzyme is often dispensable for growth perhaps due to functional redundancy. To address this challenge, we sought to generate tools that would enable selective examination of a subset of PBPs. We designed and synthesized fluorescent and biotin derivatives of the β-lactam-containing antibiotic cephalosporin C. These probes facilitated specific in vivo labeling of active PBPs in both Bacillus subtilis PY79 and an unencapsulated derivative of D39 Streptococcus pneumoniae. Microscopy and gel-based analysis indicated that the cephalosporin C-based probes are more selective than BOCILLIN-FL, a commercially available penicillin V analogue, which labels all PBPs. Dual labeling of live cells performed by saturation of cephalosporin C-susceptible PBPs followed by tagging of the remaining PBP population with BOCILLIN-FL demonstrated that the two sets of PBPs are not co-localized. This suggests that even PBPs that are located at a particular site (e.g., septum) are not all intermixed, but rather that PBP subpopulations are discretely localized. Accordingly, the Ceph C probes represent new tools to explore a subset of PBPs and have the potential to facilitate a deeper understand of the roles of this critical class of proteins.

Indexed as

Anti-Bacterial AgentsBacillus subtilisCell DivisionCephalosporinsFluorescent DyesMicroscopy, FluorescencePenicillin-Binding ProteinsPeptidesStreptococcus pneumoniaeAnti-Bacterial Agentscephalosporin CCephalosporinsFluorescent DyesPenicillin-Binding ProteinsPeptides

Identifiers

PMID22909777
PMCPMC3663142
OpenAlexW2086966899

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.