ArticleBMC plant biology2012
Construction of a high-density genetic map for grape using next generation restriction-site associated DNA sequencing.
Article in BMC plant biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers.
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Who cites it
69 citing papers in PubMed.
- SLAF-seq technology-based genome-wide association and population structure analyses of hot pepper and sweet pepper.BMC genomics · 2025Article
- Unlocking the potential of 'Egusi' melon (Frontiers in plant science · 2025Review
- Berry texture QTL and candidate gene analysis in grape (Horticulture research · 2023Article
- Development of SSR molecular markers and genetic diversity analysis of Clematis acerifolia from Taihang Mountains.PloS one · 2023Article
- Construction of ultra-high-density genetic linkage map of a sorghum-sudangrass hybrid using whole genome resequencing.PloS one · 2022Article
- QTL Mapping and Validation for Kernel Area and Circumference in Common WheatFrontiers in plant science · 2021Article
- High-Quality SNP Linkage Maps Improved QTL Mapping and Genome Assembly in Populus.The Journal of heredity · 2020Article
- Novel stable QTLs identification for berry quality traits based on high-density genetic linkage map construction in table grape.BMC plant biology · 2020Article
- New quantitative trait locus (QTLs) and candidate genes associated with the grape berry color trait identified based on a high-density genetic map.BMC plant biology · 2020Article
- High-density genetic linkage map construction and cane cold hardiness QTL mapping for Vitis based on restriction site-associated DNA sequencing.BMC genomics · 2020Article
- Characterization of genetic determinants of the resistance to phylloxera, Daktulosphaira vitifoliae, and the dagger nematode Xiphinema index from muscadine background.BMC plant biology · 2020Article
- Genetic variations of acidity in grape berries are controlled by the interplay between organic acids and potassium.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Construction of a High-Density Genetic Map and Mapping of Firmness in Grapes (International journal of molecular sciences · 2020Article
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- Unraveling the genetic architecture of grain size in einkorn wheat through linkage and homology mapping and transcriptomic profiling.Journal of experimental botany · 2019Article
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- High-density linkage map construction and mapping QTL for yield and yield components in autotetraploid alfalfa using RAD-seq.BMC plant biology · 2019Article
- QTL fine-mapping of soybean (Glycine max L.) leaf type associated traits in two RILs populations.BMC genomics · 2019Article
- Article
- A SNP-Based High-Density Genetic Map of Leaf and Fruit Related Quantitative Trait Loci in Wolfberry (Frontiers in plant science · 2019Article
9 more citing papers are in PubMed but not listed here.
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGenetic mapping and QTL detection are powerful methodologies in plant improvement and breeding. Construction of a high-density and high-quality genetic map would be of great benefit in the production of superior grapes to meet human demand. High throughput and low cost of the recently developed next generation sequencing (NGS) technology have resulted in its wide application in genome research. Sequencing restriction-site associated DNA (RAD) might be an efficient strategy to simplify genotyping. Combining NGS with RAD has proven to be powerful for single nucleotide polymorphism (SNP) marker development.
resultsAn F1 population of 100 individual plants was developed. In-silico digestion-site prediction was used to select an appropriate restriction enzyme for construction of a RAD sequencing library. Next generation RAD sequencing was applied to genotype the F1 population and its parents. Applying a cluster strategy for SNP modulation, a total of 1,814 high-quality SNP markers were developed: 1,121 of these were mapped to the female genetic map, 759 to the male map, and 1,646 to the integrated map. A comparison of the genetic maps to the published Vitis vinifera genome revealed both conservation and variations.
conclusionsThe applicability of next generation RAD sequencing for genotyping a grape F1 population was demonstrated, leading to the successful development of a genetic map with high density and quality using our designed SNP markers. Detailed analysis revealed that this newly developed genetic map can be used for a variety of genome investigations, such as QTL detection, sequence assembly and genome comparison.
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