Evidence map›Paper›PMID 22907751›Full record

ArticleMolecular and cellular biology2012

CENP-B cooperates with Set1 in bidirectional transcriptional silencing and genome organization of retrotransposons.

David R Lorenz, Irina V Mikheyeva, Peter Johansen, Lauren Meyer, Anastasia Berg, Shiv I S Grewal, Hugh P Cam

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
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  9. A Role forCells · 2020
    Article
  10. Review
  11. Article
  12. Review
  13. RNA Binding by Histone Methyltransferases Set1 and Set2.Molecular and cellular biology · 2017
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

David R LorenzBoston College, Biology Department, Chestnut Hill, Massachusetts, USA.
Irina V Mikheyeva
Peter Johansen
Lauren Meyer
Anastasia Berg
Shiv I S Grewal
Hugh P Cam
Boston College · USNational Institutes of Health · US

Funding

Roles of Chromatin-modifying Factors in Epigenetic Control of the GenomeZIABC011208 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GREWAL, SHIVINDER S · 2009 to 2025
$28.1M
Intramural NIH HHS
6 · The paper itself

Abstract

Regulation of transposable elements (TEs) is critical to the integrity of the host genome. The fission yeast Schizosaccharomyces pombe homologs of mammalian CENP-B perform a host genome surveillance role by controlling Tf2 long terminal repeat (LTR) retrotransposons. However, the mechanisms by which CENP-Bs effect their functions are ill defined. Here, we show that the multifaceted roles of Abp1, the prominent member of fission yeast CENP-Bs, are mediated in part via recognition of a 10-bp AT-rich motif present in most LTRs and require the DNA-binding, transposase, and dimerization domains of Abp1 to maintain transcriptional repression and genome organization. Expression profiling analyses indicated that Abp1 recruits class I/II histone deacetylases (HDACs) to repress Tf2 retrotransposons and genes activated in response to stresses. We demonstrate that class I/II HDACs and sirtuins mediate the clustering of dispersed Tf2 retrotransposons into Tf bodies. Intriguingly, we uncovered an unexpected cooperation between Abp1 and the histone H3K4 methyltransferase Set1 in regulating sense and antisense transcriptional silencing of Tf2 retrotransposons and Tf body integrity. Moreover, Set1-mediated regulation of Tf2 expression and nuclear organization appears to be largely independent of H3K4 methylation. Our study illuminates a molecular pathway involving a transposase-containing transcription factor that cooperates with chromatin modifiers to regulate TE activities.

Indexed as

Gene Expression Regulation, FungalGene SilencingAmino Acid MotifsCentromere Protein BDNA-Binding ProteinsGene Expression ProfilingGenome, FungalHistone DeacetylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesRetroelementsSchizosaccharomycesSchizosaccharomyces pombe ProteinsSirtuinsTerminal Repeat SequencesTranscription Factorscbp1 protein, S pombeCentromere Protein BDNA-Binding ProteinsHistone DeacetylasesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesRetroelementsSchizosaccharomyces pombe ProteinsSet1 protein, S pombeSirtuinsTranscription Factors

Identifiers

PMID22907751
PMCPMC3457346
OpenAlexW2155434011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.