Evidence map›Paper›PMID 22905200›Full record

ArticlePloS one2012

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome.

Margaret L Zupancic, Brandi L Cantarel, Zhenqiu Liu, Elliott F Drabek, Kathleen A Ryan, Shana Cirimotich, Cheron Jones, Rob Knight, William A Walters, Daniel Knights and 7 more

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 119 papers, 6 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
119citing papers in PubMed, 6 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

119 citing papers in PubMed, 6 syntheses or guidelines pooled it.

  1. Pooled it
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  6. Gut microbiota phenotypes of obesity.NPJ biofilms and microbiomes
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  9. Nutrients · 2019
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59 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Margaret L ZupancicInstitute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America.
Brandi L Cantarel
Zhenqiu Liu
Elliott F Drabek
Kathleen A Ryan
Shana Cirimotich
Cheron Jones
Rob Knight
William A Walters
Daniel Knights
Emmanuel F Mongodin
Richard B Horenstein
Braxton D Mitchell
Nanette Steinle
Soren Snitker
Alan R Shuldiner
Claire M Fraser

Funding

Research BaseP30DK072488 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI MITCHELL, BRAXTON D, TAYLOR, SIMEON I. · 2005 to 2019
$17.3M
Pharmacogenomics of CVD risk ReductionU01GM074518 · NIGMS · UNIVERSITY OF MARYLAND BALTIMORE · PI SHULDINER, ALAN R. · 2005 to 2009
$7.3M
TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
The Thrifty Microbiome: The Role of the Gut Microbiota in Obesity in the AmishUH2DK083982 · NIDDK · UNIVERSITY OF MARYLAND BALTIMORE · PI FRASER, CLAIRE M., SHULDINER, ALAN R. · 2009 to 2010
$1.3M
Howard Hughes Medical InstituteNIDDK NIH HHS DK83982NIDDK NIH HHS P30 DK072488NIDDK NIH HHS UH2 DK083982NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607NIGMS NIH HHS U01 GM074518
6 · The paper itself

Abstract

Obesity has been linked to the human gut microbiota; however, the contribution of gut bacterial species to the obese phenotype remains controversial because of conflicting results from studies in different populations. To explore the possible dysbiosis of gut microbiota in obesity and its metabolic complications, we studied men and women over a range of body mass indices from the Old Order Amish sect, a culturally homogeneous Caucasian population of Central European ancestry. We characterized the gut microbiota in 310 subjects by deep pyrosequencing of bar-coded PCR amplicons from the V1-V3 region of the 16S rRNA gene. Three communities of interacting bacteria were identified in the gut microbiota, analogous to previously identified gut enterotypes. Neither BMI nor any metabolic syndrome trait was associated with a particular gut community. Network analysis identified twenty-two bacterial species and four OTUs that were either positively or inversely correlated with metabolic syndrome traits, suggesting that certain members of the gut microbiota may play a role in these metabolic derangements.

Indexed as

MetagenomeAdultAmishFecesFemaleGastrointestinal TractHumansMaleMetabolic SyndromeMiddle AgedObesityPennsylvaniaPhenotypeRegression AnalysisRNA, Ribosomal, 16SSequence Analysis, DNARNA, Ribosomal, 16S

Identifiers

PMID22905200
PMCPMC3419686

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.