Evidence map›Paper›PMID 22904324›Full record

ArticleThe Journal of biological chemistry2012

The First structure of a lantibiotic immunity protein, SpaI from Bacillus subtilis, reveals a novel fold.

Nina A Christ, Sophie Bochmann, Daniel Gottstein, Elke Duchardt-Ferner, Ute A Hellmich, Stefanie Düsterhus, Peter Kötter, Peter Güntert, Karl-Dieter Entian, Jens Wöhnert

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

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  11. Structure and mechanism of lanthipeptide biosynthetic enzymes.Current opinion in structural biology · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Nina A ChristInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany; Center of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany.
Sophie BochmannInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Daniel GottsteinCenter of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany; Institute of Biophysical Chemistry, Goethe University, 60438 Frankfurt am Main, Germany.
Elke Duchardt-FernerInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany; Center of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany.
Ute A HellmichInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany; Center of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany; Institute of Biophysical Chemistry, Goethe University, 60438 Frankfurt am Main, Germany.
Stefanie DüsterhusInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Peter KötterInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany.
Peter GüntertCenter of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany; Institute of Biophysical Chemistry, Goethe University, 60438 Frankfurt am Main, Germany.
Karl-Dieter EntianInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany; Cluster of Excellence "Macromolecular Complexes," Goethe University, 60438 Frankfurt am Main, Germany. Electronic address: entian@bio.uni-frankfurt.de.
Jens WöhnertInstitute for Molecular Biosciences, Goethe University, 60438 Frankfurt am Main, Germany; Center of Biomolecular Magnetic Resonance, Goethe University, 60438 Frankfurt am Main, Germany; Cluster of Excellence "Macromolecular Complexes," Goethe University, 60438 Frankfurt am Main, Germany. Electronic address: woehnert@bio.uni-frankfurt.de.
Goethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lantibiotics are peptide-derived antibiotics that inhibit the growth of Gram-positive bacteria via interactions with lipid II and lipid II-dependent pore formation in the bacterial membrane. Due to their general mode of action the Gram-positive producer strains need to express immunity proteins (LanI proteins) for protection against their own lantibiotics. Little is known about the immunity mechanism protecting the producer strain against its own lantibiotic on the molecular level. So far, no structures have been reported for any LanI protein. We solved the structure of SpaI, a LanI protein from the subtilin producing strain Bacillus subtilis ATCC 6633. SpaI is a 16.8-kDa lipoprotein that is attached to the outside of the cytoplasmic membrane via a covalent diacylglycerol anchor. SpaI together with the ABC transporter SpaFEG protects the B. subtilis membrane from subtilin insertion. The solution-NMR structure of a 15-kDa biologically active C-terminal fragment reveals a novel fold. We also demonstrate that the first 20 N-terminal amino acids not present in this C-terminal fragment are unstructured in solution and are required for interactions with lipid membranes. Additionally, growth tests reveal that these 20 N-terminal residues are important for the immunity mediated by SpaI but most likely are not part of a possible subtilin binding site. Our findings are the first step on the way of understanding the immunity mechanism of B. subtilis in particular and of other lantibiotic producing strains in general.

Indexed as

Drug Resistance, BacterialBacillus subtilisBacterial ProteinsBacteriocinsLipoproteinsMembrane ProteinsProtein BindingProtein Structure, TertiaryBacterial ProteinsBacteriocinsLipoproteinsMembrane ProteinsSpaI protein, Bacillus subtilissubtilin

Identifiers

PMID22904324
PMCPMC3471728
OpenAlexW2093182448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.