Evidence map›Paper›PMID 22904092›Full record

ArticleNucleic acids research2012

Translation termination efficiency modulates ATF4 response by regulating ATF4 mRNA translation at 5' short ORFs.

Hayet Ait Ghezala, Béatrice Jolles, Samia Salhi, Katia Castrillo, Wassila Carpentier, Nicolas Cagnard, Alain Bruhat, Pierre Fafournoux, Olivier Jean-Jean

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Hayet Ait GhezalaUPMC Univ Paris 06, CNRS-FRE 3402, Biologie de l'ARN, 9 quai Saint Bernard, 75005 Paris, France.
Béatrice Jolles
Samia Salhi
Katia Castrillo
Wassila Carpentier
Nicolas Cagnard
Alain Bruhat
Pierre Fafournoux
Olivier Jean-Jean
Centre de Recherche en Nutrition Humaine Rhône-Alpes · FRSorbonne Université · FRUniversité Paris Cité · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The activating transcription factor 4 (ATF4) promotes transcriptional upregulation of specific target genes in response to cellular stress. ATF4 expression is regulated at the translational level by two short open reading frames (uORFs) in its 5'-untranslated region (5'-UTR). Here, we describe a mechanism regulating ATF4 expression in translation termination-deficient human cells. Using microarray analysis of total RNA and polysome-associated mRNAs, we show that depletion of the eucaryotic release factor 3a (eRF3a) induces upregulation of ATF4 and of ATF4 target genes. We show that eRF3a depletion modifies ATF4 translational control at regulatory uORFs increasing ATF4 ORF translation. Finally, we show that the increase of REDD1 expression, one of the upregulated targets of ATF4, is responsible for the mTOR pathway inhibition in eRF3a-depleted cells. Our results shed light on the molecular mechanisms connecting eRF3a depletion to mammalian target of rapamycin (mTOR) pathway inhibition and give an example of ATF4 activation that bypasses the signal transduction cascade leading to the phosphorylation of eIF2α. We propose that in mammals, in which the 5'-UTR regulatory elements of ATF4 mRNA are strictly conserved, variations in translation termination efficiency allow the modulation of the ATF4 response.

Indexed as

Gene Expression RegulationOpen Reading FramesPeptide Chain Termination, TranslationalActivating Transcription Factor 4Cell Line, TumorGene Knockdown TechniquesHumansOligonucleotide Array Sequence AnalysisPeptide Termination FactorsRNA, MessengerRNA StabilityTOR Serine-Threonine KinasesTranscription FactorsTranscriptomeActivating Transcription Factor 4ATF4 protein, humanDDIT4 protein, humanpeptide-chain-release factor 3Peptide Termination FactorsRNA, MessengerTOR Serine-Threonine KinasesTranscription Factors

Identifiers

PMID22904092
PMCPMC3479206
OpenAlexW2149175672

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.