Evidence map›Paper›PMID 22903163›Full record

ArticleMicrobial ecology2013

Association between the presence of class 1 integrons, virulence genes, and phylogenetic groups of Escherichia coli isolates from river water.

Ryszard Koczura, Joanna Mokracka, Agata Barczak, Natalia Krysiak, Adam Kaznowski

Open access · hybridAbstract read
In one paragraph

Article in Microbial ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 47 citations in OpenAlex.

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  12. Antimicrobial Resistance Profiles of Adherent InvasiveAntibiotics (Basel, Switzerland) · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Relationships between Virulence Factors and Antimicrobial Resistance amongOsong public health and research perspectives · 2018
    Article
  17. Genetic Environment ofFrontiers in microbiology · 2018
    Article
  18. Article
  19. Detection of Integrons and Staphylococcal Cassette ChromosomeOsong public health and research perspectives · 2017
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ryszard KoczuraDepartment of Microbiology, Faculty of Biology, Adam Mickiewicz University in Poznań, ul. Umultowska 89, 61-614, Poznań, Poland. koczma@amu.edu.pl
Joanna Mokracka
Agata Barczak
Natalia Krysiak
Adam Kaznowski
Adam Mickiewicz University in Poznań · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ninety-six class 1 integron-positive and 96 integron-negative Escherichia coli isolates cultured from the water of the Warta River, Poland, were characterized for their phylogenetic group affiliation and for the presence of genes associated with virulence. Most strains belonged to phylogenetic group A, but phylogenetic group affiliation was not related with the presence of integrons. The occurrence of heat-stable toxin gene of enterotoxigenic E. coli, S fimbriae subunit gene sfaS, and siderophore receptor genes, fyuA and iutA, was associated with the presence of class 1 integrons. Moreover, virulence factor score (the total number of virulence-associated genes) was associated with the presence of integrons in groups. The results bring new insight into relations between the presence of integrons in E. coli, virulence traits, as well as phylogenetic group affiliation.

Indexed as

PhylogenyDNA, BacterialEscherichia coliIntegronsPolandRiversVirulenceVirulence FactorsWater MicrobiologyDNA, BacterialVirulence Factors

Identifiers

PMID22903163
PMCPMC3541932
OpenAlexW2008819936

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.