Evidence map›Paper›PMID 22902875›Full record

ArticleNature medicine2012

On silico peptide microarrays for high-resolution mapping of antibody epitopes and diverse protein-protein interactions.

Jordan V Price, Stephanie Tangsombatvisit, Guangyu Xu, Jiangtao Yu, Dan Levy, Emily C Baechler, Or Gozani, Madoo Varma, Paul J Utz, Chih Long Liu

Open access · greenAbstract read
In one paragraph

Article in Nature medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
11.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 103 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Jordan V PriceDepartment of Medicine, Division of Immunology and Rheumatology, Stanford School of Medicine, Stanford, California, USA.
Stephanie Tangsombatvisit
Guangyu Xu
Jiangtao Yu
Dan Levy
Emily C Baechler
Or Gozani
Madoo Varma
Paul J Utz
Chih Long Liu
Stanford Medicine · USIntel (United States) · USStanford University · USUniversity of Minnesota Medical Center · US

Funding

Supplement - Inflammatory Triggers in B Cell AutoimmunityU19AI056363 · NIAID · DUKE UNIVERSITY · PI ST. CLAIR, EUGENE WILLIAM · 2003 to 2017
$35.3M
Virginia Mason/UCHSC Autoimmune Prevention CenterU19AI050864 · NIAID · UNIVERSITY OF COLORADO DENVER · PI EISENBARTH, GEORGE S · 2001 to 2011
$29.2M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
Vaccination and infection: indicators of immunological health and responsivenessU19AI090019 · NIAID · STANFORD UNIVERSITY · PI GREENBERG, HARRY BERNARD · 2010 to 2015
$17.3M
Function of PHD Domain Proteins in Chromatin RegulationR01GM079641 · NIGMS · STANFORD UNIVERSITY · PI GOZANI, OR P. · 2007 to 2020
$4.5M
Th17 lymphocytes in human autoimmune diseasesU19AI082719 · NIAID · STANFORD UNIVERSITY · PI FATHMAN, CHARLES GARRISON · 2009 to 2013
$3.4M
Profiling Epigenetic Biomarkers for the Study and Treatment of LupusF32AI080086 · NIAID · STANFORD UNIVERSITY · PI LIU, CHIH LONG · 2009 to 2010
$108k
CIHR 2 OR-92141NHLBI NIH HHS HHSN268201000034CNIAID NIH HHS 1 U19 AI090019NIAID NIH HHS 4 U19 AI090019NIAID NIH HHS 5 F32 AI-080086-02NIAID NIH HHS 5 U19-AI050864NIAID NIH HHS 5 U19-AI056363NIAID NIH HHS 5 U19-AI082719NIAID NIH HHS F32 AI080086NIAID NIH HHS T32 AI007290NIAID NIH HHS U19 AI050864NIAID NIH HHS U19 AI082719NIGMS NIH HHS R01 GM079641PHS HHS HHSN288201000034C
6 · The paper itself

Abstract

We developed a new, silicon-based peptide array for a broad range of biological applications, including potential development as a real-time point-of-care platform. We used photolithography on silicon wafers to synthesize microarrays (Intel arrays) that contained every possible overlapping peptide within a linear protein sequence covering the N-terminal tail of human histone H2B. These arrays also included peptides with acetylated and methylated lysine residues, reflecting post-translational modifications of H2B. We defined minimum binding epitopes for commercial antibodies recognizing the modified and unmodified H2B peptides. We further found that this platform is suitable for the highly sensitive characterization of methyltransferases and kinase substrates. The Intel arrays also revealed specific H2B epitopes that are recognized by autoantibodies in individuals with systemic lupus erythematosus who have elevated disease severity. By combining emerging nonfluorescence-based detection methods with an underlying integrated circuit, we are now poised to create a truly transformative proteomics platform with applications in bioscience, drug development and clinical diagnostics.

Indexed as

Amino Acid SequenceComputer SystemsEnzyme-Linked Immunosorbent AssayEpitopesHistonesHumansMethyltransferasesMicroarray AnalysisMolecular Sequence DataPeptidesPhosphorylationPhosphotransferasesPoint-of-Care SystemsProtein Interaction MappingProteomicsEpitopesHistonesMethyltransferasesPeptidesPhosphotransferases

Identifiers

PMID22902875
PMCPMC3491111
OpenAlexW2118447105

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.