Evidence map›Paper›PMID 22902861›Full record

ArticleStructure (London, England : 1993)2012

Distinct states of methionyl-tRNA synthetase indicate inhibitor binding by conformational selection.

Cho Yeow Koh, Jessica E Kim, Sayaka Shibata, Ranae M Ranade, Mingyan Yu, Jiyun Liu, J Robert Gillespie, Frederick S Buckner, Christophe L M J Verlinde, Erkang Fan and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 74 citations in OpenAlex.

  1. Article
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  10. Spontaneous Selection ofAntimicrobial agents and chemotherapy · 2021
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  11. Review
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  13. Article
  14. Article
  15. Conformational heterogeneity in apo and drug-bound structures of Toxoplasma gondii prolyl-tRNA synthetase.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Cho Yeow KohDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Jessica E Kim
Sayaka Shibata
Ranae M Ranade
Mingyan Yu
Jiyun Liu
J Robert Gillespie
Frederick S Buckner
Christophe L M J Verlinde
Erkang Fan
Wim G J Hol
University of Washington · USShandong University · CN

Funding

Target Selection and Ligand DiscoveryP01AI067921 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2006 to 2008
$6.7M
Selective inhibition of tRNA synthetases from pathogenic protozoaR01AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2010 to 2014
$3.3M
Structures and selective inhibition of tRNA synthetases from pathogenic protozoaR56AI084004 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2009 to 2009
$732k
NIAID NIH HHS P01 AI067921NIAID NIH HHS P01AI067921NIAID NIH HHS R01 AI084004NIAID NIH HHS R01AI084004NIAID NIH HHS R56 AI084004NIAID NIH HHS R56AI084004
6 · The paper itself

Abstract

To guide development of new drugs targeting methionyl-tRNA synthetase (MetRS) for treatment of human African trypanosomiasis, crystal structure determinations of Trypanosoma brucei MetRS in complex with its substrate methionine and its intermediate product methionyl-adenylate were followed by those of the enzyme in complex with high-affinity aminoquinolone inhibitors via soaking experiments. Drastic changes in conformation of one of the two enzymes in the asymmetric unit allowed these inhibitors to occupy an enlarged methionine pocket and a new so-called auxiliary pocket. Interestingly, a small low-affinity compound caused the same conformational changes, removed the methionine without occupying the methionine pocket, and occupied the previously not existing auxiliary pocket. Analysis of these structures indicates that the binding of the inhibitors is the result of conformational selection, not induced fit.

Indexed as

Adenosine MonophosphateAminoquinolinesAntimalarialsBenzimidazolesCatalytic DomainCrystallography, X-RayHydrogen BondingMethionineMethionine-tRNA LigaseModels, MolecularProtein BindingProtein Structure, QuaternaryProtein Structure, SecondaryProtein SubunitsSurface PropertiesTrypanosoma brucei bruceiAdenosine MonophosphateAminoquinolinesAntimalarialsBenzimidazolesMethionineMethionine-tRNA Ligasemethioninyl adenylateProtein Subunits

Identifiers

PMID22902861
PMCPMC3472110
OpenAlexW2117339468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.