Evidence map›Paper›PMID 22902622›Full record

ArticleThe Journal of biological chemistry2012

Identification of the human zinc transcriptional regulatory element (ZTRE): a palindromic protein-binding DNA sequence responsible for zinc-induced transcriptional repression.

Lisa J Coneyworth, Kelly A Jackson, John Tyson, Helen J Bosomworth, Eline van der Hagen, Georgia M Hann, Ogo A Ogo, Daniel C Swann, John C Mathers, Ruth A Valentine and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
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  13. Zinc finger protein Loz1 is required for zinc-responsive regulation of gene expression in fission yeast.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Lisa J ConeyworthInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne NE2 4NN, United Kingdom.
Kelly A Jackson
John Tyson
Helen J Bosomworth
Eline van der Hagen
Georgia M Hann
Ogo A Ogo
Daniel C Swann
John C Mathers
Ruth A Valentine
Dianne Ford
Newcastle University · GBNewcastle Hospitals - Campus for Ageing and Vitality · GB

Funding

Biotechnology and Biological Sciences Research Council BB/D01669X/1Biotechnology and Biological Sciences Research Council BB/D01669X/2Biotechnology and Biological Sciences Research Council BB/F019637/1Medical Research Council G0900686
6 · The paper itself

Abstract

Many genes with crucial roles in zinc homeostasis in mammals respond to fluctuating zinc supply through unknown mechanisms, and uncovering these mechanisms is essential to understanding the process at cellular and systemic levels. We detected zinc-dependent binding of a zinc-induced protein to a specific sequence, the zinc transcriptional regulatory element (ZTRE), in the SLC30A5 (zinc transporter ZnT5) promoter and showed that substitution of the ZTRE abrogated the repression of a reporter gene in response to zinc. We identified the ZTRE in other genes, including (through an unbiased search) the CBWD genes and (through targeted analysis) in multiple members of the SLC30 family, including SLC30A10, which is repressed by zinc. The function of the CBWD genes is currently unknown, but roles for homologs in metal homeostasis are being uncovered in bacteria. We demonstrated that CBWD genes are repressed by zinc and that substitution of the ZTRE in SLC30A10 and CBWD promoter-reporter constructs abrogates this response. Other metals did not affect expression of the transcriptional regulator, binding to the ZTRE or promoter-driven reporter gene expression. These findings provide the basis for elucidating how regulation of a network of genes through this novel mechanism contributes to zinc homeostasis and how the cell orchestrates this response.

Indexed as

Caco-2 CellsCation Transport ProteinsGene Expression RegulationHumansResponse ElementsTranscription FactorsTranscription, GeneticZincZinc Transporter 8Cation Transport ProteinsSLC30A5 protein, humanSLC30A8 protein, humanTranscription FactorsZincZinc Transporter 8

Identifiers

PMID22902622
PMCPMC3476323
OpenAlexW2112754355

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.