Evidence map›Paper›PMID 22902555›Full record

ArticleMolecular cell2012

Regulation of yeast pyruvate kinase by ultrasensitive allostery independent of phosphorylation.

Yi-Fan Xu, Xin Zhao, David S Glass, Farnaz Absalan, David H Perlman, James R Broach, Joshua D Rabinowitz

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 76 citations in OpenAlex.

  1. Adaptive evolution ofApplied and environmental microbiology · 2026
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  18. EngineeringACS synthetic biology · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yi-Fan XuLewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Xin Zhao
David S Glass
Farnaz Absalan
David H Perlman
James R Broach
Joshua D Rabinowitz
Princeton University · US

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Ras and TOR Signaling in YeastR01GM076562 · NIGMS · PRINCETON UNIVERSITY · PI BROACH, JAMES R. · 2007 to 2019
$5.0M
NIGMS NIH HHS P50 GM071508NIGMS NIH HHS R01 GM076562
6 · The paper itself

Abstract

Allostery and covalent modification are major means of fast-acting metabolic regulation. Their relative roles in responding to environmental changes remain, however, unclear. Here we examine this issue, using as a case study the rapid decrease in pyruvate kinase flux in yeast upon glucose removal. The main pyruvate kinase isozyme (Cdc19) is phosphorylated in response to environmental cues. It also exhibits positively cooperative (ultrasensitive) allosteric activation by fructose-1,6-bisphosphate (FBP). Glucose removal causes accumulation of Cdc19's substrate, phosphoenolpyruvate. This response is retained in strains with altered protein-kinase-A or AMP-activated-protein-kinase activity or with CDC19 carrying mutated phosphorylation sites. In contrast, yeast engineered with a CDC19 point mutation that ablates FBP-based regulation fail to accumulate phosphoenolpyruvate. They also fail to grow on ethanol and slowly resume growth upon glucose upshift. Thus, while yeast pyruvate kinase is covalently modified in response to glucose availability, its activity is controlled almost exclusively by ultrasensitive allostery.

Indexed as

Allosteric RegulationFructosediphosphatesGenes, FungalGlucoseIsoenzymesMetabolomePhosphoenolpyruvatePhosphorylationPoint MutationPyruvate KinaseSaccharomyces cerevisiaeTranscriptomeFructosediphosphatesGlucoseIsoenzymesPhosphoenolpyruvatePyruvate Kinase

Identifiers

PMID22902555
PMCPMC3472130
OpenAlexW1985430490

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.