Evidence map›Paper›PMID 22902549›Full record

ArticleJournal of hepatology2013

HCV NS5A and IRF9 compete for CypA binding.

Michael Bobardt, Sam Hopkins, James Baugh, Udayan Chatterji, Felicia Hernandez, John Hiscott, Ann Sluder, Kai Lin, Philippe A Gallay

Abstract read
In one paragraph

Article in Journal of hepatology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  11. Chaperones in hepatitis C virus infection.World journal of hepatology · 2016
    Review
  12. Article
  13. Article
  14. Article
  15. Review
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  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Michael BobardtDepartment of Immunology & Microbial Science, The Scripps Research Institute, La Jolla, CA 92037, USA.
Sam Hopkins
James Baugh
Udayan Chatterji
Felicia Hernandez
John Hiscott
Ann Sluder
Kai Lin
Philippe A Gallay

Funding

Cyclophilins, Cyclophilin Inhibitors and Hepatitis CR01AI087746 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI GALLAY, PHILIPPE ANDRE · 2010 to 2014
$2.3M
Cyclophilins and the IFN ResponseR01AI105007 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI GALLAY, PHILIPPE ANDRE · 2014 to 2017
$1.6M
PHARMACOTHERAPY FOR XEROSTOMIA IN SJOGREN'S SYNDROMER43AR052986 · NIAMS · PARION SCIENCES, INC. · PI HOPKINS, SAMUEL EARL · 2005 to 2005
$490k
Peptide inhibitors of coronavirus entryR43AI112221 · NIAID · AUTOIMMUNE TECHNOLOGIES, LLC · PI HOPKINS, SAMUEL EARL · 2014 to 2014
$225k
NIAID NIH HHS R01 AI087746NIAID NIH HHS R01 AI105007NIAID NIH HHS R43 AI112221NIAMS NIH HHS R43 AR052986
6 · The paper itself

Abstract

BACKGROUND &

aimsCyclophilin A (CypA) is vital for HCV replication. Cyp inhibitors successfully decrease viral loads in HCV-infected patients. However, their mechanisms of action remain unknown. Since interferon (IFN) can also suppress HCV replication, we asked whether a link between CypA and the IFN response exists.

methodsWe used cellular and recombinant pulldown approaches to investigate the possibility of a specific association of CypA with host ligands.

resultsWe found for the first time that CypA binds to a major component of the IFN response - the IFN regulatory factor 9 (IRF9). IRF9 is the DNA-binding component of the transcriptional IFN-stimulated gene factor 3 (ISGF3). CypA binds directly to IRF9 via its peptidyl-prolyl isomerase (PPIase) pocket. Cyp inhibitors such as cyclosporine A (CsA) or non-immunosuppressive derivates such as alisporivir and SCY-635, prevent IRF9-CypA complex formation. CypA binds to the C-terminal IRF-association-domain (IAD), but not to the DNA-binding or linker domains of IRF9. Remarkably, CypA associates with the multimeric ISGF3 complex. We also obtained evidence that CypA neutralization enhances IFN-induced transcription. Interestingly, the hepatitis C virus (HCV) non-structural 5A (NS5A) protein, which is known to modulate the IFN response, competes with IRF9 for CypA binding and can prevent the formation of IRF9-CypA complexes.

conclusionsThis study demonstrates for the first time that CypA binds specifically to a component of the Janus kinase/signal transducer and activator of transcription (JAK/STAT) pathway, IRF9. This study also reveals a novel opportunity of HCV to modulate the IFN response via NS5A.

Indexed as

Binding, CompetitiveBinding SitesCyclophilin AHepacivirusHepatitis C, ChronicHep G2 CellsHumansInterferonsInterferon-Stimulated Gene Factor 3, gamma SubunitJanus KinasesLigandsRNA-Dependent RNA PolymeraseSignal TransductionSTAT1 Transcription FactorSTAT2 Transcription FactorTranscriptional ActivationCyclophilin AInterferonsInterferon-Stimulated Gene Factor 3, gamma SubunitIRF9 protein, humanJanus KinasesLigandsNS-5 protein, hepatitis C virusRNA-Dependent RNA PolymeraseSTAT1 protein, humanSTAT1 Transcription FactorSTAT2 protein, humanSTAT2 Transcription FactorViral Nonstructural Proteins

Identifiers

PMID22902549
PMCPMC3527675

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.