Evidence map›Paper›PMID 22902402›Full record

ArticleCell reports2012

A conserved deubiquitinating enzyme controls cell growth by regulating RNA polymerase I stability.

Lauren A Richardson, Benjamin J Reed, J Michael Charette, Emily F Freed, Eric K Fredrickson, Melissa N Locke, Susan J Baserga, Richard G Gardner

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Histone H2B ubiquitylation: Connections to transcription and effects on chromatin structure.Biochimica et biophysica acta. Gene regulatory mechanisms · 2024
    Review
  6. Review
  7. Deubiquitylating Enzymes in Cancer and Immunity.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Lauren A RichardsonDepartment of Pharmacology, University of Washington, Seattle, 98195, USA.
Benjamin J Reed
J Michael Charette
Emily F Freed
Eric K Fredrickson
Melissa N Locke
Susan J Baserga
Richard G Gardner
University of Washington · USYale University · USSeattle University · US

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
GENETICS AND GENOMICS OF HUMAN DISEASET32HD007149 · NICHD · YALE UNIVERSITY · PI James P Noonan · 1985 to 2026
$8.2M
The Architecture and Function of RNPs Required for Ribosome BiogenesisR01GM052581 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 2001 to 2013
$4.4M
RESEARCH TRAINING: RADIATION THERAPY, BIOLOGY, PHYSICST32CA009259 · NCI · YALE UNIVERSITY · PI GLAZER, PETER M · 1985 to 2009
$1.4M
Discovery of ubiquitin ligase substrates - the development of integrated experimeR21RR025787 · NCRR · UNIVERSITY OF WASHINGTON · PI GARDNER, RICHARD GEORGE, RANDOLPH, TIMOTHY W · 2009 to 2010
$616k
The Role of Ribosome Biogenesis Factors in Liver CirrhosisF31AA019842 · NIAAA · YALE UNIVERSITY · PI FREED, EMILY FRANCES · 2011 to 2012
$32k
NCI NIH HHS T32 CA009259NCI NIH HHS T32CA009259NCRR NIH HHS R21 RR025787NCRR NIH HHS R21RR025787NIAAA NIH HHS F31 AA019842NIAAA NIH HHS F31AA019842NICHD NIH HHS T32 HD007149NICHD NIH HHS T32HD07149NIGMS NIH HHS R01 GM052581NIGMS NIH HHS R01GM052581NIGMS NIH HHS T32 GM007750NIGMS NIH HHS T32GM007750
6 · The paper itself

Abstract

Eukaryotic ribosome biogenesis requires hundreds of trans-acting factors and dozens of RNAs. Although most factors required for ribosome biogenesis have been identified, little is known about their regulation. Here, we reveal that the yeast deubiquitinating enzyme Ubp10 is localized to the nucleolus and that ubp10Δ cells have reduced pre-rRNAs, mature rRNAs, and translating ribosomes. Through proteomic analyses, we found that Ubp10 interacts with proteins that function in rRNA production and ribosome biogenesis. In particular, we discovered that the largest subunit of RNA polymerase I (RNAPI) is stabilized via Ubp10-mediated deubiquitination and that this is required in order to achieve optimal levels of ribosomes and cell growth. USP36, the human ortholog of Ubp10, complements the ubp10Δ allele for RNAPI stability, pre-rRNA processing, and cell growth in yeast, suggesting that deubiquitination of RNAPI may be conserved in eukaryotes. Our work implicates Ubp10/USP36 as a key regulator of rRNA production through control of RNAPI stability.

Indexed as

Cell NucleolusEnzyme StabilityGenetic Complementation TestHumansNuclear ProteinsRNA, FungalRNA Polymerase IRNA, RibosomalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinationUbiquitin ThiolesteraseNuclear ProteinsRNA, FungalRNA Polymerase IRNA, RibosomalSaccharomyces cerevisiae ProteinsUbiquitin ThiolesteraseUBP10 protein, S cerevisiaeUSP36 protein, human

Identifiers

PMID22902402
PMCPMC3638920
OpenAlexW2157316981

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.