Evidence map›Paper›PMID 22897889›Full record

ArticleBMC genomics2012

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Sanjiveeni Dhamgaye, Maria Bernard, Gaelle Lelandais, Odile Sismeiro, Sophie Lemoine, Jean-Yves Coppée, Stéphane Le Crom, Rajendra Prasad, Frédéric Devaux

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Candida albicans reprioritizes metal handling during fluconazole stress.Metallomics : integrated biometal science · 2019
    Article
  4. Article
  5. Article
  6. Review
  7. Azole resistance in aThe Journal of biological chemistry · 2018
    Article
  8. Antimicrobial agents and chemotherapy · 2017
    Article
  9. Article
  10. Article
  11. Open forum infectious diseases · 2016
    Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Sanjiveeni DhamgayeMembrane Biology Laboratory, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India.
Maria Bernard
Gaelle Lelandais
Odile Sismeiro
Sophie Lemoine
Jean-Yves Coppée
Stéphane Le Crom
Rajendra Prasad
Frédéric Devaux
Centre National de la Recherche Scientifique · FRInstitut Pasteur · FRJawaharlal Nehru University · INInstitut de Biologie de l'École Normale Supérieure · FRSorbonne Paris Cité · FRSorbonne Université · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDrug susceptible clinical isolates of Candida albicans frequently become highly tolerant to drugs during chemotherapy, with dreadful consequences to patient health. We used RNA sequencing (RNA-seq) to analyze the transcriptomes of a CDR (Candida Drug Resistance) strain and its isogenic drug sensitive counterpart.

resultsRNA-seq unveiled differential expression of 228 genes including a) genes previously identified as involved in CDR, b) genes not previously associated to the CDR phenotype, and c) novel transcripts whose function as a gene is uncharacterized. In particular, we show for the first time that CDR acquisition is correlated with an overexpression of the transcription factor encoding gene CZF1. CZF1 null mutants were susceptible to many drugs, independently of known multidrug resistance mechanisms. We show that CZF1 acts as a repressor of β-glucan synthesis, thus negatively regulating cell wall integrity. Finally, our RNA-seq data allowed us to identify a new transcribed region, upstream of the TAC1 gene, which encodes the major CDR transcriptional regulator.

conclusionOur results open new perspectives of the role of Czf1 and of our understanding of the transcriptional and post-transcriptional mechanisms that lead to the acquisition of drug resistance in C. albicans, with potential for future improvements of therapeutic strategies.

Indexed as

beta-GlucansCandida albicansDrug Resistance, FungalFungal ProteinsGene Expression ProfilingSequence Analysis, RNATranscription Factorsbeta-GlucansCZF1 protein, Candida albicansFungal ProteinsTranscription Factors

Identifiers

PMID22897889
PMCPMC3447688
OpenAlexW2031896736

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.