Evidence map›Paper›PMID 22894767›Full record

ArticleBMC medical genetics2012

A founder mutation in the PEX6 gene is responsible for increased incidence of Zellweger syndrome in a French Canadian population.

Sebastien Levesque, Charles Morin, Simon-Pierre Guay, Josee Villeneuve, Pascale Marquis, Wing Yan Yik, Sarn Jiralerspong, Luigi Bouchard, Steven Steinberg, Joseph G Hacia and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Fatty Acid Metabolism in Peroxisomes and Related Disorders.Advances in experimental medicine and biology · 2024
    Review
  6. Article
  7. Article
  8. Review
  9. A founder mutation in PEX12 among Egyptian patients in peroxisomal biogenesis disorder.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2021
    Article
  10. Ophthalmology science · 2021
    Article
  11. Review
  12. Article
  13. Exome sequencing identifiesMolecular vision · 2020
    Article
  14. Carrier frequency estimation of Zellweger spectrum disorder using ExAC database and bioinformatics tools.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  15. Two novel mutations ofAnnals of translational medicine · 2019
    Article
  16. Article
  17. Article
  18. A novelHuman genome variation · 2017
    Article
  19. Peroxisome biogenesis disorders.Translational science of rare diseases · 2016
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Sebastien LevesqueDepartment of Pediatrics, Université de Sherbrooke, Sherbrooke, Canada. sebastien.a.levesque@usherbrooke.ca
Charles Morin
Simon-Pierre Guay
Josee Villeneuve
Pascale Marquis
Wing Yan Yik
Sarn Jiralerspong
Luigi Bouchard
Steven Steinberg
Joseph G Hacia
Ken Dewar
Nancy E Braverman
Cégep de Chicoutimi · CAMcGill University · CAMcGill University and Génome Québec Innovation Centre · CAUniversité de Sherbrooke · CAUniversity of Southern California · USKennedy Krieger Institute · US

Funding

RNA Programmed Translation RecodingR01GM072447 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BUTCHER, SAMUEL E · 2005 to 2016
$2.6M
Comparative Genomics of Peroxisomal Lipid MetabolismR01GM072477 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI HACIA, JOSEPH G · 2005 to 2009
$1.8M
NINDS Exploratory/Developmental Projects in Translational ResearchR21NS064572 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BRAVERMAN, NANCY ELISE, HACIA, JOSEPH G · 2008 to 2009
$412k
CIHRNIGMS NIH HHS GM072447NIGMS NIH HHS R01 GM072477NINDS NIH HHS NS064572NINDS NIH HHS R21 NS064572
6 · The paper itself

Abstract

backgroundZellweger syndrome (ZS) is a peroxisome biogenesis disorder due to mutations in any one of 13 PEX genes. Increased incidence of ZS has been suspected in French-Canadians of the Saguenay-Lac-St-Jean region (SLSJ) of Quebec, but this remains unsolved.

methodsWe identified 5 ZS patients from SLSJ diagnosed by peroxisome dysfunction between 1990-2010 and sequenced all coding exons of known PEX genes in one patient using Next Generation Sequencing (NGS) for diagnostic confirmation.

resultsA homozygous mutation (c.802_815del, p.[Val207_Gln294del, Val76_Gln294del]) in PEX6 was identified and then shown in 4 other patients. Parental heterozygosity was confirmed in all. Incidence of ZS was estimated to 1 in 12,191 live births, with a carrier frequency of 1 in 55. In addition, we present data suggesting that this mutation abolishes a SF2/ASF splice enhancer binding site, resulting in the use of two alternative cryptic donor splice sites and predicted to encode an internally deleted in-frame protein.

conclusionWe report increased incidence of ZS in French-Canadians of SLSJ caused by a PEX6 founder mutation. To our knowledge, this is the highest reported incidence of ZS worldwide. These findings have implications for carrier screening and support the utility of NGS for molecular confirmation of peroxisomal disorders.

Indexed as

Founder EffectMutationAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesBase SequenceFemaleFranceHigh-Throughput Nucleotide SequencingHumansMaleQuebecWhite PeopleZellweger SyndromeAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesPEX6 protein, human

Identifiers

PMID22894767
PMCPMC3483250
OpenAlexW2000256578

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.