Evidence map›Paper›PMID 22893598›Full record

ArticleChembiochem : a European journal of chemical biology2012

A novel approach to the discovery of small-molecule ligands of CDK2.

Mathew P Martin, Riazul Alam, Stephane Betzi, Donna J Ingles, Jin-Yi Zhu, Ernst Schönbrunn

Open access · greenAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 87 citations in OpenAlex.

  1. Structural insights into multitargetingMicrobiology spectrum · 2026
    Article
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  3. Article
  4. Article
  5. Fine-Tuning DiffDock-L for Allosteric Kinase Docking.Journal of chemical information and modeling · 2026
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Novel 2-Sulfanylquinazolin-4(3Molecules (Basel, Switzerland) · 2023
    Article
  12. Article
  13. Article
  14. Allosteric regulation and inhibition of protein kinases.Biochemical Society transactions · 2023
    Review
  15. Article
  16. TWN-FS method: A novel fragment screening method for drug discovery.Computational and structural biotechnology journal · 2023
    Article
  17. TWN-RENCOD: A novel method for protein binding site comparison.Computational and structural biotechnology journal · 2023
    Article
  18. Article
  19. Review
  20. Tetrahydroindazole inhibitors of CDK2/cyclin complexes.European journal of medicinal chemistry · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Mathew P MartinDrug Discovery Department, Moffitt Cancer Center and Research Institute, 12902 Magnolia Drive, Tampa, FL 33612, USA.
Riazul Alam
Stephane Betzi
Donna J Ingles
Jin-Yi Zhu
Ernst Schönbrunn
Moffitt Cancer Center · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Small Molecule Inhibitors of DMRT1-Regulated Target Genes as Male ContraceptivesU54HD055763 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI KINSEY, WILLIAM H · 2007 to 2011
$9.7M
NCI NIH HHS P30 CA076292NICHD NIH HHS U54 HD055763NICHD NIH HHS U54-HD055763
6 · The paper itself

Abstract

In an attempt to identify novel small-molecule ligands of cyclin-dependent kinase 2 (CDK2) with potential as allosteric inhibitors, we have devised a robust and cost-effective fluorescence-based high-throughput screening assay. The assay is based on the specific interaction of CDK2 with the extrinsic fluorophore 8-anilino-1-naphthalene sulfonate (ANS), which binds to a large allosteric pocket adjacent to the ATP site. Hit compounds that displace ANS directly or indirectly from CDK2 are readily classified as ATP site binders or allosteric ligands through the use of staurosporine, which blocks the ATP site without displacing ANS. Pilot screening of 1453 compounds led to the discovery of 12 compounds with displacement activities (EC(50) values) ranging from 6 to 44 μM, all of which were classified as ATP-site-directed ligands. Four new type I inhibitor scaffolds were confirmed by X-ray crystallography. Although this small compound library contained only ATP-site-directed ligands, the application of this assay to large compound libraries has the potential to reveal previously unrecognized chemical scaffolds suitable for structure-based design of CDK2 inhibitors with new mechanisms of action.

Indexed as

Allosteric RegulationAnilino NaphthalenesulfonatesBinding SitesCrystallography, X-RayCyclin-Dependent Kinase 2Drug Evaluation, PreclinicalHigh-Throughput Screening AssaysHumansLigandsProtein BindingProtein Kinase InhibitorsProtein Structure, TertiaryRecombinant ProteinsSmall Molecule Libraries8-anilino-1-naphthalenesulfonic acidAnilino NaphthalenesulfonatesCyclin-Dependent Kinase 2LigandsProtein Kinase InhibitorsRecombinant ProteinsSmall Molecule Libraries

Identifiers

PMID22893598
PMCPMC3483082
OpenAlexW1996352794

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.