Evidence map›Paper›PMID 22892838›Full record

ReviewMammalian genome : official journal of the International Mammalian Genome Society2012

Hybrid mouse diversity panel: a panel of inbred mouse strains suitable for analysis of complex genetic traits.

Anatole Ghazalpour, Christoph D Rau, Charles R Farber, Brian J Bennett, Luz D Orozco, Atila van Nas, Calvin Pan, Hooman Allayee, Simon W Beaven, Mete Civelek and 27 more

Abstract readReview
In one paragraph

Review in Mammalian genome : official journal of the International Mammalian Genome Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Genome-wide association study for age-related hearing loss (AHL) in the mouse: a meta-analysis.Journal of the Association for Research in Otolaryngology : JARO · 2014
    Pooled it
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors.

Anatole GhazalpourDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
Christoph D Rau
Charles R Farber
Brian J Bennett
Luz D Orozco
Atila van Nas
Calvin Pan
Hooman Allayee
Simon W Beaven
Mete Civelek
Richard C Davis
Thomas A Drake
Rick A Friedman
Nick Furlotte
Simon T Hui
J David Jentsch
Emrah Kostem
Hyun Min Kang
Eun Yong Kang
Jong Wha Joo
Vyacheslav A Korshunov
Rick E Laughlin
Lisa J Martin
Jeffrey D Ohmen
Brian W Parks
Matteo Pellegrini
Karen Reue
Desmond J Smith
Sotirios Tetradis
Jessica Wang
Yibin Wang
James N Weiss
Todd Kirchgessner
Peter S Gargalovic
Eleazar Eskin
Aldons J Lusis
Renée C LeBoeuf

Funding

UCLA Clinical and Translational Science InstituteUL1TR000124 · NCATS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI DUBINETT, STEVEN M. · 2012 to 2015
$57.0M
ULTRASTRUCTURE OF THE INTIMA IN EARLY LESION FORMATIONP01HL030568 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI FOGELMAN, ALAN M · 1985 to 2019
$55.2M
Systems genomics of metabolic syndrome traitsP01HL028481 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 1985 to 2019
$50.2M
The Lipin Protein Family and Triglyceride Metabolism P01HL090553 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI YOUNG, STEPHEN G. · 2008 to 2018
$23.3M
Substance Abuse & Behavioral Disinhibition: Integrating Genes & EnvironmentU01DA024417 · NIDA · UNIVERSITY OF MINNESOTA · PI IACONO, WILLIAM G. · 2007 to 2010
$10.8M
CARDIOVASCULAR SCIENTIST TRAINING PROGRAMT32HL007895 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SHIVKUMAR, KALYANAM, WATSON, KAROL E · 1998 to 2023
$9.2M
Training Grant in Genomic Analysis and InterpretationT32HG002536 · NHGRI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Valerie A Arboleda, Harold Pimentel · 2002 to 2026
$8.6M
Vascular Biology Training GrantT32HL069766 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 2002 to 2022
$7.4M
Systems Genetics of Type 1 Diabetes ComplicationsDP3DK094311 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE · 2011 to 2011
$4.3M
Neuroendocrinology, Sex Differences, and ReproductionT32HD007228 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ARNOLD, ARTHUR P · 1985 to 2015
$3.9M
PREDOCTORAL TRAINING PROGRAM IN GENETIC MECHANISMS AT UCT32GM007104 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GOBER, JAMES W · 1985 to 2011
$3.6M
A Systems Approach to Dissect Genetic Basis of Heart FailureR01HL123295 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LUSIS, ALDONS JAKE, WANG, YIBIN · 2014 to 2017
$2.6M
NCATS NIH HHS UL1 TR000124NHGRI NIH HHS T32 HG002536NHGRI NIH HHS T32-HG002536NHLBI NIH HHS K25 HL080079NHLBI NIH HHS K25-HL080079NHLBI NIH HHS K99 HL102223NHLBI NIH HHS P01 HL028481NHLBI NIH HHS P01 HL030568NHLBI NIH HHS P01 HL090553NHLBI NIH HHS P01-HL28481NHLBI NIH HHS P01-HL30568NHLBI NIH HHS R00 HL102223NHLBI NIH HHS R01 HL098227NHLBI NIH HHS R01 HL105623NHLBI NIH HHS R01 HL123295NHLBI NIH HHS T32 HL007895NHLBI NIH HHS T32-HL007895NHLBI NIH HHS T32 HL069766NHLBI NIH HHS T32 HL69766NIAMS NIH HHS R01 AR057759NICHD NIH HHS T32 HD007228NIDA NIH HHS U01 DA024417NIDCD NIH HHS 5R01 DC010856-02NIDCD NIH HHS R01 DC010856NIDDK NIH HHS DP3 DK094311NIDDK NIH HHS F32 DK074317NIDDK NIH HHS R01 DK072206NIDDK NIH HHS R01 DK080339NIEHS NIH HHS N01 ES045530NIGMS NIH HHS GM07104NIGMS NIH HHS R01 GM095656NIGMS NIH HHS R01 GM098273NIGMS NIH HHS T32 GM007104NINDS NIH HHS R01 NS050148
6 · The paper itself

Abstract

We have developed an association-based approach using classical inbred strains of mice in which we correct for population structure, which is very extensive in mice, using an efficient mixed-model algorithm. Our approach includes inbred parental strains as well as recombinant inbred strains in order to capture loci with effect sizes typical of complex traits in mice (in the range of 5% of total trait variance). Over the last few years, we have typed the hybrid mouse diversity panel (HMDP) strains for a variety of clinical traits as well as intermediate phenotypes and have shown that the HMDP has sufficient power to map genes for highly complex traits with resolution that is in most cases less than a megabase. In this essay, we review our experience with the HMDP, describe various ongoing projects, and discuss how the HMDP may fit into the larger picture of common diseases and different approaches.

Indexed as

AnimalsDatabases, GeneticMiceMice, Inbred Strains

Identifiers

PMID22892838
PMCPMC3586763

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.