Evidence map›Paper›PMID 22892321›Full record

ArticleThe Plant cell2012

The histone methyltransferase SDG724 mediates H3K36me2/3 deposition at MADS50 and RFT1 and promotes flowering in rice.

Changhui Sun, Jun Fang, Taolan Zhao, Bo Xu, Fantao Zhang, Linchuan Liu, Jiuyou Tang, Genfa Zhang, Xiaojian Deng, Fan Chen and 3 more

Abstract read
In one paragraph

Article in The Plant cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Genome-Wide Identification of theInternational journal of molecular sciences · 2024
    Article
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  6. Article
  7. A novel functional allele ofMolecular breeding : new strategies in plant improvement · 2024
    Article
  8. Article
  9. Article
  10. Adaptation to high latitudes through a novel allele of Hd3a strongly promoting heading date in rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  11. Article
  12. Review
  13. Transcription factor bZIP65 delays flowering via suppressingMolecular breeding : new strategies in plant improvement · 2022
    Article
  14. Article
  15. Crosstalk between the Circadian Clock and Histone Methylation.International journal of molecular sciences · 2022
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Changhui SunState Key Laboratory of Plant Genomics and National Center for Plant Gene Research (Beijing), Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Jun Fang
Taolan Zhao
Bo Xu
Fantao Zhang
Linchuan Liu
Jiuyou Tang
Genfa Zhang
Xiaojian Deng
Fan Chen
Qian Qian
Xiaofeng Cao
Chengcai Chu

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin modifications affect flowering time in the long-day plant Arabidopsis thaliana, but the role of histone methylation in flowering time regulation of rice (Oryza sativa), a short-day plant, remains to be elucidated. We identified a late-flowering long vegetative phase1 (lvp1) mutant in rice and used map-based cloning to reveal that lvp1 affects the SET domain group protein 724 (SDG724). SDG724 functions as a histone methyltransferase in vitro and contributes to a major fraction of global histone H3 lysine 36 (H3K36) methylation in vivo. Expression analyses of flowering time genes in wild-type and lvp1 mutants revealed that Early heading date1, but not Heading date1, are misregulated in lvp1 mutants. In addition, the double mutant of lvp1 with photoperiod sensitivity5 (se5) flowered later than the se5 single mutant, indicating that lvp1 delays flowering time irrespective of photoperiod. Chromatin immunoprecipitation assays showed that lvp1 had reduced levels of H3K36me2/3 at MADS50 and RFT1. This suggests that the divergent functions of paralogs RFT1 and Hd3a, and of MADS50 and MADS51, are in part due to differential H3K36me2/3 deposition, which also correlates with higher expression levels of MADS50 and RFT1 in flowering promotion in rice.

Indexed as

Amino Acid SequenceChromatin Assembly and DisassemblyChromatin ImmunoprecipitationChromosome MappingCloning, MolecularFlowersGene Expression Regulation, PlantGenes, PlantGenetic LociGenetic VectorsGenotyping TechniquesHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesMethylationMolecular Sequence DataHistone-Lysine N-MethyltransferaseHistone MethyltransferasesHistonesPlant Proteins

Identifiers

PMID22892321
PMCPMC3462628

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.