Evidence map›Paper›PMID 22891768›Full record

ArticleACS chemical biology2012

Uncoupling intramolecular processing and substrate hydrolysis in the N-terminal nucleophile hydrolase hASRGL1 by circular permutation.

Wenzong Li, Jason R Cantor, S D Yogesha, Shirley Yang, Lynne Chantranupong, June Qingxia Liu, Giulia Agnello, George Georgiou, Everett M Stone, Yan Zhang

Abstract read
In one paragraph

Article in ACS chemical biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Towards a dependable data set of structures for L-asparaginase research.Acta crystallographica. Section D, Structural biology · 2024
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Deletion ofFrontiers in cell and developmental biology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Wenzong LiDepartment of Chemistry and Biochemistry, University of Texas, Austin, Texas 78712, United States.
Jason R Cantor
S D Yogesha
Shirley Yang
Lynne Chantranupong
June Qingxia Liu
Giulia Agnello
George Georgiou
Everett M Stone
Yan Zhang

Funding

Engineering and Evaluation of Human L-Methionase for Cancer TherapyR01CA154754 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI GEORGIOU, GEORGE GEORGIOU, STONE, EVERETT · 2011 to 2014
$1.7M
Human engineered enzymes for L-Arg depletion chemotherapyR01CA139059 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI GEORGIOU, GEORGE GEORGIOU · 2009 to 2011
$989k
NCI NIH HHS 1 R01 CA154754NCI NIH HHS R01 CA139059NCI NIH HHS R01 CA154754
6 · The paper itself

Abstract

The human asparaginase-like protein 1 (hASRGL1) catalyzes the hydrolysis of l-asparagine and isoaspartyl-dipeptides. As an N-terminal nucleophile (Ntn) hydrolase superfamily member, the active form of hASRGL1 is generated by an intramolecular cleavage step with Thr168 as the catalytic residue. However, in vitro, autoprocessing is incomplete (~50%), fettering the biophysical characterization of hASRGL1. We circumvented this obstacle by constructing a circularly permuted hASRGL1 that uncoupled the autoprocessing reaction, allowing us to kinetically and structurally characterize this enzyme and the precursor-like hASRGL1-Thr168Ala variant. Crystallographic and biochemical evidence suggest an activation mechanism where a torsional restraint on the Thr168 side chain helps drive the intramolecular processing reaction. Cleavage and formation of the active site releases the torsional restriction on Thr168, which is facilitated by a small conserved Gly-rich loop near the active site that allows the conformational changes necessary for activation.

Indexed as

AmidohydrolasesAsparaginaseAsparagineAutoantigensCatalytic DomainCrystallography, X-RayEnzyme ActivationHumansHydrolysisModels, MolecularPoint MutationProtein ConformationAmidohydrolasesAsparaginaseAsparagineASRGL1 protein, humanAutoantigensN-terminal nucleophile hydrolase

Identifiers

PMID22891768
PMCPMC3514461

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.