Evidence map›Paper›PMID 22891277›Full record

ArticleThe Journal of general physiology2012

Impact of signaling microcompartment geometry on GPCR dynamics in live retinal photoreceptors.

Mehdi Najafi, Mohammad Haeri, Barry E Knox, William E Schiesser, Peter D Calvert

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 24 citations in OpenAlex.

  1. Supramolecular organization of rhodopsin in rod photoreceptor cell membranes.Pflugers Archiv : European journal of physiology · 2021
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
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  8. Molecular basis for photoreceptor outer segment architecture.Progress in retinal and eye research · 2016
    Review
  9. Article
  10. Article
  11. Applications of phototransformable fluorescent proteins for tracking the dynamics of cellular components.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Article
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  18. Stretching and setting boundaries.The Journal of general physiology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mehdi NajafiDepartment of Ophthalmology, State University of New York Upstate Medical University, Syracuse, NY 13210, USA.
Mohammad Haeri
Barry E Knox
William E Schiesser
Peter D Calvert
SUNY Upstate Medical University · USLehigh University · US

Funding

Supplement for ZetaSizer instrumentR01EY018421 · NEI · UPSTATE MEDICAL UNIVERSITY · PI CALVERT, PETER DEANE · 2007 to 2025
$6.2M
MOLECULAR MECHANISMS OF PHOTORECEPTOR FUNCTIONR01EY012975 · NEI · UPSTATE MEDICAL UNIVERSITY · PI KNOX, BARRY E · 2000 to 2010
$2.3M
NEI NIH HHS R01 EY012975NEI NIH HHS R01EY012975NEI NIH HHS R01 EY018421NEI NIH HHS R01EY018421
6 · The paper itself

Abstract

G protein-coupled receptor (GPCR) cascades rely on membrane protein diffusion for signaling and are generally found in spatially constrained subcellular microcompartments. How the geometry of these microcompartments impacts cascade activities, however, is not understood, primarily because of the inability of current live cell-imaging technologies to resolve these small structures. Here, we examine the dynamics of the GPCR rhodopsin within discrete signaling microcompartments of live photoreceptors using a novel high resolution approach. Rhodopsin fused to green fluorescent protein variants, either enhanced green fluorescent protein (EGFP) or the photoactivatable PAGFP (Rho-E/PAGFP), was expressed transgenically in Xenopus laevis rod photoreceptors, and the geometries of light signaling microcompartments formed by lamellar disc membranes and their incisure clefts were resolved by confocal imaging. Multiphoton fluorescence relaxation after photoconversion experiments were then performed with a Ti-sapphire laser focused to the diffraction limit, which produced small sub-cubic micrometer volumes of photoconverted molecules within the discrete microcompartments. A model of molecular diffusion was developed that allows the geometry of the particular compartment being examined to be specified. This was used to interpret the experimental results. Using this unique approach, we showed that rhodopsin mobility across the disc surface was highly heterogeneous. The overall relaxation of Rho-PAGFP fluorescence photoactivated within a microcompartment was biphasic, with a fast phase lasting several seconds and a slow phase of variable duration that required up to several minutes to reach equilibrium. Local Rho-EGFP diffusion within defined compartments was monotonic, however, with an effective lateral diffusion coefficient D(lat) = 0.130 ± 0.012 µm(2)s(-1). Comparison of rhodopsin-PAGFP relaxation time courses with model predictions revealed that microcompartment geometry alone may explain both fast local rhodopsin diffusion and its slow equilibration across the greater disc membrane. Our approach has for the first time allowed direct examination of GPCR dynamics within a live cell signaling microcompartment and a quantitative assessment of the impact of compartment geometry on GPCR activity.

Indexed as

Amino Acid SequenceAnimalsFluorescence Recovery After PhotobleachingGreen Fluorescent ProteinsLight Signal TransductionMembrane MicrodomainsMicroscopy, Fluorescence, MultiphotonModels, BiologicalMolecular Sequence DataRecombinant ProteinsRetinal Rod Photoreceptor CellsRhodopsinXenopusGreen Fluorescent ProteinsRecombinant ProteinsRhodopsin

Identifiers

PMID22891277
PMCPMC3434098
OpenAlexW2138091393

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.