Evidence map›Paper›PMID 22891273›Full record

ArticleThe Journal of experimental medicine2012

The coding genome of splenic marginal zone lymphoma: activation of NOTCH2 and other pathways regulating marginal zone development.

Davide Rossi, Vladimir Trifonov, Marco Fangazio, Alessio Bruscaggin, Silvia Rasi, Valeria Spina, Sara Monti, Tiziana Vaisitti, Francesca Arruga, Rosella Famà and 30 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 197 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
197citing papers in PubMed, 4 pooled it
21.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

197 citing papers in PubMed, 4 syntheses or guidelines pooled it, 378 citations in OpenAlex.

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137 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 15 institutions in 3 countries.

Davide RossiDivision of Hematology and 9 Laboratory of Medical Informatics, Department of Translational Medicine, Amedeo Avogadro University of Eastern Piedmont, 28100 Novara, Italy.
Vladimir Trifonov
Marco Fangazio
Alessio Bruscaggin
Silvia Rasi
Valeria Spina
Sara Monti
Tiziana Vaisitti
Francesca Arruga
Rosella Famà
Carmela Ciardullo
Mariangela Greco
Stefania Cresta
Daniela Piranda
Antony Holmes
Giulia Fabbri
Monica Messina
Andrea Rinaldi
Jiguang Wang
Claudio Agostinelli
Pier Paolo Piccaluga
Marco Lucioni
Fabrizio Tabbò
Roberto Serra
Silvia Franceschetti
Clara Deambrogi
Giulia Daniele
Valter Gattei
Roberto Marasca
Fabio Facchetti
Luca Arcaini
Giorgio Inghirami
Francesco Bertoni
Stefano A Pileri
Silvia Deaglio
Robin Foà
Riccardo Dalla-Favera
Laura Pasqualucci
Raul Rabadan
Gianluca Gaidano
Università degli Studi del Piemonte Orientale “Amedeo Avogadro” · ITColumbia University · USUniversity of Bologna · ITUniversity of Turin · ITInstitute of Oncology Research · CHItalian institute for Genomic Medicine · ITUniversity of Pavia · ITCancer Genetics (United States) · USCentro di Riferimento Oncologico · ITHerbert Irving Comprehensive Cancer CenterSapienza University of Rome · ITUniversity of Bari Aldo Moro · ITUniversity of Brescia · ITUniversity of Modena and Reggio Emilia · ITUniversity of Perugia · IT

Funding

The Role of BCL-6 in Berminal Center FormationP01CA092625 · NCI · DANA-FARBER CANCER INSTITUTE · PI SHIPP, MARGARET A · 2001 to 2011
$32.9M
NCI NIH HHS P01 CA092625NCI NIH HHS P01-CA092625
6 · The paper itself

Abstract

Splenic marginal zone lymphoma (SMZL) is a B cell malignancy of unknown pathogenesis, and thus an orphan of targeted therapies. By integrating whole-exome sequencing and copy-number analysis, we show that the SMZL exome carries at least 30 nonsilent gene alterations. Mutations in NOTCH2, a gene required for marginal-zone (MZ) B cell development, represent the most frequent lesion in SMZL, accounting for ∼20% of cases. All NOTCH2 mutations are predicted to cause impaired degradation of the NOTCH2 protein by eliminating the C-terminal PEST domain, which is required for proteasomal recruitment. Among indolent B cell lymphoproliferative disorders, NOTCH2 mutations are restricted to SMZL, thus representing a potential diagnostic marker for this lymphoma type. In addition to NOTCH2, other modulators or members of the NOTCH pathway are recurrently targeted by genetic lesions in SMZL; these include NOTCH1, SPEN, and DTX1. We also noted mutations in other signaling pathways normally involved in MZ B cell development, suggesting that deregulation of MZ B cell development pathways plays a role in the pathogenesis of ∼60% SMZL. These findings have direct implications for the treatment of SMZL patients, given the availability of drugs that can target NOTCH, NF-κB, and other pathways deregulated in this disease.

Indexed as

MutationB-LymphocytesChromatin Assembly and DisassemblyDNA-Binding ProteinsExomeGene Expression Regulation, NeoplasticHomeodomain ProteinsHumansLymphoma, B-CellNF-kappa BNuclear ProteinsPolymorphism, Single NucleotideReceptor, Notch1Receptor, Notch2RNA-Binding ProteinsSignal TransductionDNA-Binding ProteinsHomeodomain ProteinsNF-kappa BNOTCH1 protein, humanNOTCH2 protein, humanNuclear ProteinsReceptor, Notch1Receptor, Notch2RNA-Binding ProteinsSPEN protein, human

Identifiers

PMID22891273
PMCPMC3428941
OpenAlexW2147253462

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.