Evidence map›Paper›PMID 22891237›Full record

ArticlePlant physiology2012

Structural characterization of Arabidopsis leaf arabinogalactan polysaccharides.

Theodora Tryfona, Hui-Chung Liang, Toshihisa Kotake, Yoichi Tsumuraya, Elaine Stephens, Paul Dupree

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 148 citations in OpenAlex.

  1. Article
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  10. Review
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  19. Article
  20. Frontiers in plant science · 2022
    Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Theodora TryfonaSchool of Biological Sciences, Department of Biochemistry, Cambridge University, CB2 1QW Cambridge, United Kingdom.
Hui-Chung Liang
Toshihisa Kotake
Yoichi Tsumuraya
Elaine Stephens
Paul Dupree
Saitama University · JPUniversity of Cambridge · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G016240/1
6 · The paper itself

Abstract

Proteins decorated with arabinogalactan (AG) have important roles in cell wall structure and plant development, yet the structure and biosynthesis of this polysaccharide are poorly understood. To facilitate the analysis of biosynthetic mutants, water-extractable arabinogalactan proteins (AGPs) were isolated from the leaves of Arabidopsis (Arabidopsis thaliana) plants and the structure of the AG carbohydrate component was studied. Enzymes able to hydrolyze specifically AG were utilized to release AG oligosaccharides. The released oligosaccharides were characterized by high-energy matrix-assisted laser desorption ionization-collision-induced dissociation mass spectrometry and polysaccharide analysis by carbohydrate gel electrophoresis. The Arabidopsis AG is composed of a β-(1→3)-galactan backbone with β-(1→6)-d-galactan side chains. The β-(1→6)-galactan side chains vary in length from one to over 20 galactosyl residues, and they are partly substituted with single α-(1→3)-l-arabinofuranosyl residues. Additionally, a substantial proportion of the β-(1→6)-galactan side chain oligosaccharides are substituted at the nonreducing termini with single 4-O-methyl-glucuronosyl residues via β-(1→6)-linkages. The β-(1→6)-galactan side chains are occasionally substituted with α-l-fucosyl. In the fucose-deficient murus1 mutant, AGPs lack these fucose modifications. This work demonstrates that Arabidopsis mutants in AGP structure can be identified and characterized. The detailed structural elucidation of the AG polysaccharides from the leaves of Arabidopsis is essential for insights into the structure-function relationships of these molecules and will assist studies on their biosynthesis.

Indexed as

ArabidopsisArabidopsis ProteinsCarbon IsotopesCell WallElectrophoresis, Agar GelFucoseGalactansGlucosidesHydrolysisIsotope LabelingModels, MolecularMolecular ConformationMucoproteinsPhloroglucinolPlant LeavesPlant ProteinsArabidopsis Proteinsarabinogalactanarabinogalactan proteinsCarbon IsotopesFucoseGalactansGlucosidesMucoproteinsmur1 protein, ArabidopsisPhloroglucinolPlant ProteinsYariv reagent

Identifiers

PMID22891237
PMCPMC3461546
OpenAlexW2056331077

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.