Evidence map›Paper›PMID 22890888›Full record

ArticleThe protein journal2012

Identification of histidine residues involved in Zn(2+) binding to αA- and αB-crystallin by chemical modification and MALDI TOF mass spectrometry.

Srabani Karmakar, K P Das

Abstract read
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In one paragraph

Article in The protein journal, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Heat shock proteins and metal ions - Reaction or interaction?Computational and structural biotechnology journal · 2023
    Review
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  7. Review
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Srabani KarmakarProtein Chemistry Laboratory, Department of Chemistry, Bose Institute, 93/1 A.P.C. Road, Kolkata, 700009, India. snat14@gmail.com
K P Das
Bose Institute · INTata Institute of Fundamental Research · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

α-Crystallin, a member of the small heat shock protein family is the major protein of mammalian eye lens and is a molecular chaperone. As there is no protein turn over in the lens, stability of α-crystallin is one of the most crucial factors for its survival and function. We previously reported that the molecular chaperone-like activity and stability of α-crystallin dramatically increased in the presence of Zn(2+) (Biochemistry, 2008). We also reported that each subunit of α-crystallin could bind multiple zinc ions through inter-subunit bridging giving rise to enhanced stability (Biopolymers, 2011). The amino acid residues involved in zinc binding were not known. Since cysteine residues were not responsible for binding to Zn(2+), we tried to identify the histidine residues bound to zinc ions. We modified recombinant αA- and αB-crystallin with diethylpyrocarbonate (DEPC) a histidine modifying reagent, in presence and absence of Zn(2+) followed by tryptic digestion. The residues modified by DEPC were identified through peptide mass matching by MALDI mass spectrometry. We have clearly identified H79, H107 and H115 of αA-crystallin and H104, H111 and H119 of αB-crystallin as the Zn(2+) binding residues. The significance of the histidine rich sequence region of α-crystallin for its stability is discussed.

Indexed as

alpha-Crystallin A Chainalpha-Crystallin B ChainAmino Acid SequenceDiethyl PyrocarbonateHistidineHumansMolecular Sequence DataPeptide FragmentsProtein BindingProtein StabilitySequence Analysis, ProteinSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTrypsinZincalpha-Crystallin A Chainalpha-Crystallin B ChainDiethyl PyrocarbonateHistidinePeptide FragmentsTrypsinZinc

Identifiers

PMID22890888
OpenAlexW1990970132

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.