Evidence map›Paper›PMID 22890842›Full record

ArticleMolecular and cellular biology2012

Combinatorial mutagenesis of MBNL1 zinc fingers elucidates distinct classes of regulatory events.

Jamie Purcell, Julia C Oddo, Eric T Wang, J Andrew Berglund

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 26 citations in OpenAlex.

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  15. Mechanistic determinants of MBNL activity.Nucleic acids research · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Jamie PurcellDepartment of Chemistry and Institute of Molecular Biology, University of Oregon, Eugene, Oregon, USA.
Julia C Oddo
Eric T Wang
J Andrew Berglund
University of Oregon · USMassachusetts Institute of Technology · US

Funding

MOLECULAR BIOLOGY AND BIOPHYSICST32GM007759 · NIGMS · UNIVERSITY OF OREGON · PI NOLEN, BRADLEY J · 1985 to 2021
$8.5M
Targeting a Toxic RNA with Small MoleculesR01AR059833 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2010 to 2014
$1.7M
Molecular Mechanisms of Myotonic DystrophyR01AR053903 · NIAMS · UNIVERSITY OF OREGON · PI BERGLUND, ANDREW · 2006 to 2010
$1.3M
NIAMS NIH HHS AR053903NIAMS NIH HHS AR059833NIAMS NIH HHS R01 AR053903NIAMS NIH HHS R01 AR059833NIGMS NIH HHS GM-07759NIGMS NIH HHS T32 GM007759
6 · The paper itself

Abstract

The RNA binding protein and alternative splicing factor Muscleblind-like 1 (MBNL1) has been a topic of intense study due to its role in myotonic dystrophy (DM) pathogenesis. MBNL1 contains four zinc finger (ZF) RNA binding domains arranged in two pairs. Through combinatorial mutagenesis of the ZF domains, we demonstrate that the pairs of ZFs have differential affinity for RNA and subsequently differential splicing activities. We evaluated splicing and binding activity for six MBNL1-mediated splicing events and found that the splicing activity profiles for the ZF mutants vary among transcripts. Clustering analysis of splicing profiles revealed that two distinct classes of MBNL1 pre-mRNA substrates exist. For some of the RNA transcripts tested, binding and splicing activity of the ZF mutants correlated. However, for some transcripts it appears that MBNL1 exerts robust splicing activity in the absence of RNA binding. We demonstrate that functionally distinct classes of MBNL1-mediated splicing events exist as defined by requirements for ZF-RNA interactions.

Indexed as

RNA SplicingExonsHeLa CellsHumansIntronsMutagenesisRNA-Binding ProteinsZinc FingersMBNL1 protein, humanRNA-Binding Proteins

Identifiers

PMID22890842
PMCPMC3457334
OpenAlexW2133381968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.