Evidence map›Paper›PMID 22888148›Full record

ArticleMolecular & cellular proteomics : MCP2012

Protein-protein-interaction network organization of the hypusine modification system.

Henning Sievert, Simone Venz, Oscar Platas-Barradas, Vishnu M Dhople, Martin Schaletzky, Claus-Henning Nagel, Melanie Braig, Michael Preukschas, Nora Pällmann, Carsten Bokemeyer and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
  2. The hypusine pathway inFrontiers in cellular and infection microbiology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Validation ofPeerJ · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The hypusine-containing translation factor eIF5A.Critical reviews in biochemistry and molecular biology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 8 institutions in 2 countries.

Henning SievertDepartment of Oncology, Hematology and Bone Marrow Transplantation with Section Pneumology, Hubertus Wald-Tumor Zentrum, University Hospital Eppendorf, and Institute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Hamburg, Germany.
Simone Venz
Oscar Platas-Barradas
Vishnu M Dhople
Martin Schaletzky
Claus-Henning Nagel
Melanie Braig
Michael Preukschas
Nora Pällmann
Carsten Bokemeyer
Tim H Brümmendorf
Ralf Pörtner
Reinhard Walther
Kent E Duncan
Joachim Hauber
Stefan Balabanov
Universität Hamburg · DEUniversität Greifswald · DELeibniz Institute of Virology (LIV) · DEUniversity Cancer Center Hamburg · DEHamburg University of Technology · DEMSH Medical School Hamburg – University of Applied Sciences and Medical University · DERWTH Aachen University · DEUniversity Medical Center Hamburg-Eppendorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hypusine modification of eukaryotic initiation factor 5A (eIF-5A) represents a unique and highly specific post-translational modification with regulatory functions in cancer, diabetes, and infectious diseases. However, the specific cellular pathways that are influenced by the hypusine modification remain largely unknown. To globally characterize eIF-5A and hypusine-dependent pathways, we used an approach that combines large-scale bioreactor cell culture with tandem affinity purification and mass spectrometry: "bioreactor-TAP-MS/MS." By applying this approach systematically to all four components of the hypusine modification system (eIF-5A1, eIF-5A2, DHS, and DOHH), we identified 248 interacting proteins as components of the cellular hypusine network, with diverse functions including regulation of translation, mRNA processing, DNA replication, and cell cycle regulation. Network analysis of this data set enabled us to provide a comprehensive overview of the protein-protein interaction landscape of the hypusine modification system. In addition, we validated the interaction of eIF-5A with some of the newly identified associated proteins in more detail. Our analysis has revealed numerous novel interactions, and thus provides a valuable resource for understanding how this crucial homeostatic signaling pathway affects different cellular functions.

Indexed as

Protein Interaction MapsProtein Processing, Post-TranslationalAnimalsComputational BiologyDNA-Binding ProteinsEukaryotic Translation Initiation Factor 5AHumansLysineMass SpectrometryMiceMixed Function OxygenasesMultivesicular BodiesNIH 3T3 CellsNuclear ProteinsNucleophosminOxidoreductases Acting on CH-NH Group Donorsdeoxyhypusine hydroxylasedeoxyhypusine synthaseDNA-Binding ProteinsEukaryotic Translation Initiation Factor 5AhypusineLysineMixed Function OxygenasesNuclear ProteinsNucleophosminOxidoreductases Acting on CH-NH Group DonorsPeptide FragmentsPeptide Initiation FactorsRecombinant Fusion ProteinsRibosomal ProteinsRNA-Binding Proteins

Identifiers

PMID22888148
PMCPMC3494187
OpenAlexW2155907934

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.