Evidence map›Paper›PMID 22888040›Full record

ArticleAmerican journal of medical genetics. Part A2012

SMARCAL1 deficiency predisposes to non-Hodgkin lymphoma and hypersensitivity to genotoxic agents in vivo.

Alireza Baradaran-Heravi, Anja Raams, Joanna Lubieniecka, Kyoung Sang Cho, Kristi A DeHaai, Mitra Basiratnia, Pierre-Olivier Mari, Yutong Xue, Michael Rauth, Ann Haskins Olney and 7 more

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 1 synthesis or guideline pooled it, 42 citations in OpenAlex.

  1. Pooled it
  2. SMARCAL1 is a new osteosarcoma predisposition gene.Journal of the National Cancer Institute · 2026
    Article
  3. Review
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  14. Functions of SMARCAL1, ZRANB3, and HLTF in maintaining genome stability.Critical reviews in biochemistry and molecular biology · 2017
    Review
  15. Article
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  18. Article
  19. HIV-1 Vpr degrades the HLTF DNA translocase in T cells and macrophages.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 11 institutions in 5 countries.

Alireza Baradaran-HeraviChild and Family Research Institute, Department of Medical Genetics, University of British Columbia, Vancouver, British Columbia, Canada.
Anja Raams
Joanna Lubieniecka
Kyoung Sang Cho
Kristi A DeHaai
Mitra Basiratnia
Pierre-Olivier Mari
Yutong Xue
Michael Rauth
Ann Haskins Olney
Mary Shago
Kunho Choi
Rosanna A Weksberg
Malgorzata J M Nowaczyk
Weidong Wang
Nicolaas G J Jaspers
Cornelius F Boerkoel
Erasmus MC · NLChild and Family Research Institute · CANational Institutes of Health · USUniversity of British Columbia · CAUniversity of Toronto · CABaylor College of Medicine · USMcMaster University · CANebraska Medical Center · USShiraz University of Medical Sciences · IRSickKids Foundation · CAUniversity of Nebraska Medical Center · US

Funding

Characterization of a Complex Involved In Rothmund-Thomson SyndromeZIAAG000661 · NIA · NATIONAL INSTITUTE ON AGING · PI WANG, WEIDONG · 2009 to 2019
$6.1M
ISOLATION OF PROTEIN COMPLEX INVOLVED IN BLOOM SYNDROMEZ01AG000657 · NIA · NATIONAL INSTITUTE ON AGING · PI WANG, WEIDONG · 2000 to 2008
$636k
A MURINE MODEL OF SMITH-MAGENIS SYNDROMEK08DK002738 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BOERKOEL, CORNELIUS F · 1999 to 2003
$482k
A Mouse Model for Schimke Immuno-osseous DysplasiaR21DK065725 · NIDDK · UNIVERSITY OF BRITISH COLUMBIA · PI BOERKOEL, CORNELIUS F · 2005 to 2006
$255k
Characterization of SMARCAL1:its expression/interactorsR03DK062174 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI BOERKOEL, CORNELIUS F · 2002 to 2003
$151k
Intramural NIH HHS Z01 AG000657NIA NIH HHS Z01 AG000657-08NIDDK NIH HHS K08 DK002738NIDDK NIH HHS R03 DK062174NIDDK NIH HHS R21 DK065725NIDDK NIH HHS R21DK065725
6 · The paper itself

Abstract

Schimke immuno-osseous dysplasia (SIOD) is a multisystemic disorder with prominent skeletal, renal, immunological, and ectodermal abnormalities. It is caused by mutations of SMARCAL1 (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily a-like 1), which encodes a DNA stress response protein. To determine the relationship of this function to the SIOD phenotype, we profiled the cancer prevalence in SIOD and assessed if defects of nucleotide excision repair (NER) and nonhomologous end joining (NHEJ), respectively, explained the ectodermal and immunological features of SIOD. Finally, we determined if Smarcal1(del/del) mice had hypersensitivity to irinotecan (CPT-11), etoposide, and hydroxyurea (HU) and whether exposure to these agents induced features of SIOD. Among 71 SIOD patients, three had non-Hodgkin lymphoma (NHL) and one had osteosarcoma. We did not find evidence of defective NER or NHEJ; however, Smarcal1-deficient mice were hypersensitive to several genotoxic agents. Also, CPT-11, etoposide, and HU caused decreased growth and loss of growth plate chondrocytes. These data, which identify an increased prevalence of NHL in SIOD and confirm hypersensitivity to DNA damaging agents in vivo, provide guidance for the management of SIOD patients.

Indexed as

AnimalsAntineoplastic Combined Chemotherapy ProtocolsCell LineDNA End-Joining RepairDNA HelicasesDNA RepairHumansIn Situ Nick-End LabelingLymphoma, Non-HodgkinMiceDNA HelicasesSMARCAL1 protein, human

Identifiers

PMID22888040
PMCPMC3429644
OpenAlexW1996621745

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.