Evidence map›Paper›PMID 22888002›Full record

ArticleThe Journal of biological chemistry2012

The apo-structure of the low molecular weight protein-tyrosine phosphatase A (MptpA) from Mycobacterium tuberculosis allows for better target-specific drug development.

Tanja Stehle, Sridhar Sreeramulu, Frank Löhr, Christian Richter, Krishna Saxena, Hendrik R A Jonker, Harald Schwalbe

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Review
  6. Shikonin and Juglone InhibitBiotech (Basel (Switzerland)) · 2023
    Article
  7. Article
  8. Article
  9. Structural basis for the recognition of the bacterial tyrosine kinase Wzc by its cognate tyrosine phosphatase Wzb.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  10. Review
  11. Chembiochem : a European journal of chemical biology · 2021
    Article
  12. Article
  13. The domain architecture of PtkA, the first tyrosine kinase fromThe Journal of biological chemistry · 2018
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Microbial protein-tyrosine kinases.The Journal of biological chemistry · 2014
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Tanja StehleInstitute for Organic Chemistry and Chemical Biology, ohann Wolfgang Goethe University, Max-von-Laue-Strasse 7, D-60438 Frankfurt am Main, Germany.
Sridhar Sreeramulu
Frank Löhr
Christian Richter
Krishna Saxena
Hendrik R A Jonker
Harald Schwalbe
Goethe University Frankfurt · DEInstitute of Physical and Organic Chemistry · BYInstitute of Organic Chemistry · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein-tyrosine phosphatases (PTPs) and protein-tyrosine kinases co-regulate cellular processes. In pathogenic bacteria, they are frequently exploited to act as key virulence factors for human diseases. Mycobacterium tuberculosis, the causative organism of tuberculosis, secretes a low molecular weight PTP (LMW-PTP), MptpA, which is required for its survival upon infection of host macrophages. Although there is otherwise no sequence similarity of LMW-PTPs to other classes of PTPs, the phosphate binding loop (P-loop) CX(5)R and the loop containing a critical aspartic acid residue (D-loop), required for the catalytic activity, are well conserved. In most high molecular weight PTPs, ligand binding to the P-loop triggers a large conformational reorientation of the D-loop, in which it moves ∼10 Å, from an "open" to a "closed" conformation. Until now, there have been no ligand-free structures of LMW-PTPs described, and hence the dynamics of the D-loop have remained largely unknown for these PTPs. Here, we present a high resolution solution NMR structure of the free form of the MptpA LMW-PTP. In the absence of ligand and phosphate ions, the D-loop adopts an open conformation. Furthermore, we characterized the binding site of phosphate, a competitive inhibitor of LMW-PTPs, on MptpA and elucidated the involvement of both the P- and D-loop in phosphate binding. Notably, in LMW-PTPs, the phosphorylation status of two well conserved tyrosine residues, typically located in the D-loop, regulates the enzyme activity. PtkA, the kinase complementary to MptpA, phosphorylates these two tyrosine residues in MptpA. We characterized the MptpA-PtkA interaction by NMR spectroscopy to show that both the P- and D-loop form part of the binding interface.

Indexed as

Bacterial ProteinsCyclic AMP-Dependent Protein KinasesProtein Tyrosine PhosphatasesApoenzymesCrystallography, X-RayDrug Delivery SystemsHumansMacrophagesMycobacterium tuberculosisNuclear Magnetic Resonance, BiomolecularPhosphorylationProtein Structure, SecondaryApoenzymesBacterial ProteinsCyclic AMP-Dependent Protein KinasesMptpA protein, Mycobacterium tuberculosisProtein Tyrosine Phosphatases

Identifiers

PMID22888002
PMCPMC3464563
OpenAlexW2069624339

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.