Evidence map›Paper›PMID 22886086›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Fast rebinding increases dwell time of Src homology 2 (SH2)-containing proteins near the plasma membrane.

Dongmyung Oh, Mari Ogiue-Ikeda, Joshua A Jadwin, Kazuya Machida, Bruce J Mayer, Ji Yu

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Binding memory of liquid molecules.Nature communications · 2025
    Article
  5. Enzymatic Reactions Dictated by the 2D Membrane Environment.The journal of physical chemistry letters · 2025
    Article
  6. Eph receptor signaling complexes in the plasma membrane.Trends in biochemical sciences · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Dephosphorylation accelerates the dissociation of ZAP70 from the T cell receptor.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  11. Article
  12. Biomolecular condensates in membrane receptor signaling.Current opinion in cell biology · 2021
    Review
  13. Nanopore-mediated protein delivery enabling three-color single-molecule tracking in living cells.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Biomolecular NMR assignments · 2020
    Article
  15. Article
  16. Article
  17. Binding Revisited-Avidity in Cellular Function and Signaling.Frontiers in molecular biosciences · 2020
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Dongmyung OhCenter for Cell Analysis and Modeling, University of Connecticut Health Center, Farmington, CT 06030, USA.
Mari Ogiue-Ikeda
Joshua A Jadwin
Kazuya Machida
Bruce J Mayer
Ji Yu
UConn Health · USLaboratory of Molecular Genetics · PL

Funding

Functional Role of NCK and CRK Binding InteractionsR01CA082258 · NCI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI MAYER, BRUCE J. · 1999 to 2012
$4.2M
Dynamics and Topology of Phosphotyrosine-SH2 Interaction NetworksU01CA154966 · NCI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI MAYER, BRUCE J., WHITE, FOREST M · 2011 to 2015
$2.4M
Bacterial cytoskeletal structures and dynamics at single molecule levelR01GM085301 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI YU, JI · 2009 to 2013
$1.4M
A novel molecular diagnostic approach to classify lung cancers and predict responRC1CA146843 · NCI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HAURA, ERIC B., MAYER, BRUCE J. · 2009 to 2010
$983k
NCI NIH HHS R01 CA082258NCI NIH HHS R01CA82258NCI NIH HHS RC1 CA146843NCI NIH HHS RC1CA146843NCI NIH HHS U01 CA154966NCI NIH HHS U01CA154966NIGMS NIH HHS R01 GM085301NIGMS NIH HHS R01GM085301
6 · The paper itself

Abstract

Receptor tyrosine kinases (RTKs) control a host of biological functions by phosphorylating tyrosine residues of intracellular proteins upon extracellular ligand binding. The phosphotyrosines (p-Tyr) then recruit a subset of ∼100 Src homology 2 (SH2) domain-containing proteins to the cell membrane. The in vivo kinetics of this process are not well understood. Here we use total internal reflection (TIR) microscopy and single-molecule imaging to monitor interactions between SH2 modules and p-Tyr sites near the cell membrane. We found that the dwell time of SH2 modules within the TIR illumination field is significantly longer than predictions based on chemical dissociation rate constants, suggesting that SH2 modules quickly rebind to nearby p-Tyr sites after dissociation. We also found that, consistent with the rebinding model, the effective diffusion constant is negatively correlated with the respective dwell time for different SH2 domains and the dwell time is positively correlated with the local density of RTK phosphorylation. These results suggest a mechanism whereby signal output can be regulated through the spatial organization of multiple binding sites, which will prompt reevaluation of many aspects of RTK signaling, such as signaling specificity, mechanisms of spatial control, and noise suppression.

Indexed as

Models, ChemicalBinding SitesCarcinoma, Squamous CellCell Line, TumorCell MembraneDiffusionErbB ReceptorsHumansKineticsLung NeoplasmsMicroscopyPhosphorylationPhosphotyrosineProtein Structure, TertiarySignal Transductionsrc Homology DomainsErbB ReceptorsPhosphotyrosine

Identifiers

PMID22886086
PMCPMC3435163
OpenAlexW2088431582

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.