Evidence map›Paper›PMID 22885637›Full record

ArticleMicrobial ecology2013

Characterization of the bacterial diversity in Indo-West Pacific loliginid and sepiolid squid light organs.

Ricardo Guerrero-Ferreira, Clayton Gorman, Alba A Chavez, Shantell Willie, Michele K Nishiguchi

Abstract read
In one paragraph

Article in Microbial ecology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ricardo Guerrero-FerreiraDepartment of Pediatrics, Division of Pediatric Infectious Diseases, Emory University School of Medicine, Atlanta, GA 30322, USA.
Clayton Gorman
Alba A Chavez
Shantell Willie
Michele K Nishiguchi

Funding

Translational Control in the Hepatitis C VirusS06GM008136 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI KUEHN, GLENN D · 1989 to 2011
$23.2M
RISE PROGRAM AT NEW MEXICO STATE UNIVERSITYR25GM061222 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI HOUSTON, JESSICA PEREA, REDDI, LAKSHMI · 2000 to 2022
$21.3M
Undergraduate Biomedical Research Training at New Mexico State Univ., Las CrucesT34GM007667 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI UNGUEZ, GRACIELA ALEXANDRA · 1985 to 2022
$13.6M
TWO-YEAR TO FOUR-YEAR TRANSITION PROGRAMR25GM048998 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI BEGAYE, MICHAEL, BOWMAN, CLARISSA · 1992 to 2020
$4.6M
Selection of host specific genes in environmentally transmitted mutualismSC1AI081659 · NIAID · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI NISHIGUCHI, MICHELE KIYOKO · 2008 to 2011
$1.2M
NIAID NIH HHS 1SC1AI081659NIAID NIH HHS SC1 AI081659NIGMS NIH HHS GM-61222-01NIGMS NIH HHS R25 GM048998NIGMS NIH HHS R25 GM061222NIGMS NIH HHS R25 GM48998NIGMS NIH HHS S06 GM008136NIGMS NIH HHS SO6 GM008136-32 S2NIGMS NIH HHS T34 GM007667
6 · The paper itself

Abstract

Loliginid and sepiolid squid light organs are known to host a variety of bacterial species from the family Vibrionaceae, yet little is known about the species diversity and characteristics among different host squids. Here we present a broad-ranging molecular and physiological analysis of the bacteria colonizing light organs in loliginid and sepiolid squids from various field locations of the Indo-West Pacific (Australia and Thailand). Our PCR-RFLP analysis, physiological characterization, carbon utilization profiling, and electron microscopy data indicate that loliginid squid in the Indo-West Pacific carry a consortium of bacterial species from the families Vibrionaceae and Photobacteriaceae. This research also confirms our previous report of the presence of Vibrio harveyi as a member of the bacterial population colonizing light organs in loliginid squid. pyrH sequence data were used to confirm isolate identity, and indicates that Vibrio and Photobacterium comprise most of the light organ colonizers of squids from Australia, confirming previous reports for Australian loliginid and sepiolid squids. In addition, combined phylogenetic analysis of PCR-RFLP and 16S rDNA data from Australian and Thai isolates associated both Photobacterium and Vibrio clades with both loliginid and sepiolid strains, providing support that geographical origin does not correlate with their relatedness. These results indicate that both loliginid and sepiolid squids demonstrate symbiont specificity (Vibrionaceae), but their distribution is more likely due to environmental factors that are present during the infection process. This study adds significantly to the growing evidence for complex and dynamic associations in nature and highlights the importance of exploring symbiotic relationships in which non-virulent strains of pathogenic Vibrio species could establish associations with marine invertebrates.

Indexed as

SymbiosisAnimalsAnimal StructuresAustraliaBacteriological TechniquesDecapodiformesDNA, BacterialLuminescenceMetagenomePhotobacteriumPhylogenyPolymerase Chain ReactionPolymorphism, Restriction Fragment LengthRNA, Ribosomal, 16SSequence Analysis, DNAThailandDNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID22885637
PMCPMC3557516

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.