Evidence map›Paper›PMID 22885060›Full record

ArticleCurrent biology : CB2012

Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator.

Roberto Bonasio, Qiye Li, Jinmin Lian, Navdeep S Mutti, Lijun Jin, Hongmei Zhao, Pei Zhang, Ping Wen, Hui Xiang, Yun Ding and 9 more

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 189 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
189citing papers in PubMed, 1 pooled it
20.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

189 citing papers in PubMed, 1 synthesis or guideline pooled it, 414 citations in OpenAlex.

  1. Pooled it
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  5. Review
  6. Transgenerational epigenetic effect of kings' aging on offspring's caste fate mediated by sperm DNA methylation in termites.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  14. Pervasive relaxed selection in termite genomes.Proceedings. Biological sciences · 2024
    Article
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  19. Neuromodulators and neuroepigenetics of social behavior in ants.Annals of the New York Academy of Sciences · 2023
    Review
  20. Article

129 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 3 countries.

Roberto BonasioHoward Hughes Medical Institute and Department of Biochemistry, New York University School of Medicine, New York, NY 10016.
Qiye Li
Jinmin Lian
Navdeep S Mutti
Lijun Jin
Hongmei Zhao
Pei Zhang
Ping Wen
Hui Xiang
Yun Ding
Zonghui Jin
Steven S Shen
Zongji Wang
Wen Wang
Jun Wang
Shelley L Berger
Jürgen Liebig
Guojie Zhang
Danny Reinberg
BGI Group (China) · CNArizona State University · USKunming Institute of Zoology · CNNew York University · USChinese Academy of Sciences · CNHoward Hughes Medical Institute · USSouth China University of Technology · CNUniversity of Pennsylvania · US

Funding

Howard Hughes Medical InstituteHoward Hughes Medical Institute 2009005
6 · The paper itself

Abstract

backgroundAnt societies comprise individuals belonging to different castes characterized by specialized morphologies and behaviors. Because ant embryos can follow different developmental trajectories, epigenetic mechanisms must play a role in caste determination. Ants have a full set of DNA methyltransferases and their genomes contain methylcytosine. To determine the relationship between DNA methylation and phenotypic plasticity in ants, we obtained and compared the genome-wide methylomes of different castes and developmental stages of Camponotus floridanus and Harpegnathos saltator.

resultsIn the ant genomes, methylcytosines are found both in symmetric CG dinucleotides (CpG) and non-CpG contexts and are strongly enriched at exons of active genes. Changes in exonic DNA methylation correlate with alternative splicing events such as exon skipping and alternative splice site selection. Several genes exhibit caste-specific and developmental changes in DNA methylation that are conserved between the two species, including genes involved in reproduction, telomere maintenance, and noncoding RNA metabolism. Several loci are methylated and expressed monoallelically, and in some cases, the choice of methylated allele depends on the caste.

conclusionsThese first ant methylomes and their intra- and interspecies comparison reveal an exonic methylation pattern that points to a connection between DNA methylation and splicing. The presence of monoallelic DNA methylation and the methylation of non-CpG sites in all samples suggest roles in genome regulation in these social insects, including the intriguing possibility of parental or caste-specific genomic imprinting.

Indexed as

DNA MethylationGene Expression RegulationGenome, Insect5-MethylcytosineAnimalsAntsCpG IslandsCytosineDNA Transposable ElementsEpigenesis, GeneticExonsGene Expression Regulation, DevelopmentalRNA Splice SitesTranscriptome5-MethylcytosineCytosineDNA Transposable ElementsRNA Splice Sites

Identifiers

PMID22885060
PMCPMC3498763
OpenAlexW2066121814

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.