Evidence map›Paper›PMID 22880155›Full record

ArticleJournal of preventive medicine and public health = Yebang Uihakhoe chi2012

Nail DNA and possible biomarkers: a pilot study.

Joshua Park, Debbie Liang, Jung Woo Kim, Yongjun Luo, Taesheng Huang, Soo-Young Kim, Seong-Sil Chang

Open access · goldAbstract read
In one paragraph

Article in Journal of preventive medicine and public health = Yebang Uihakhoe chi, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Joshua ParkGenetic Epidemiology Research Institute, University of California, Irvine, USA.
Debbie Liang
Jung Woo Kim
Yongjun Luo
Taesheng Huang
Soo-Young Kim
Seong-Sil Chang
Eulji University Hospital · KRUniversity of California, Irvine · USPai Chai University · KR

Funding

Study on the intracellular Network of TBX3R01CA121876 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI HUANG, TAOSHENG · 2007 to 2010
$1.1M
NCI NIH HHS R01 CA121876NCI NIH HHS R01CA121876
6 · The paper itself

Abstract

objectivesNail has been a substitute DNA source for genotyping. To investigate the integrity and consistency of nail DNA amplification for biomarker study, nail clippings from 12 subjects were collected at monthly intervals. The possibility of longer amplification and existence of GAPDH RNA/protein, were also investigated with three nail samples.

methodsThree primer sets were designed for quantitative amplification of nuclear and mitochondrial genes and analysis of their consistency. The mean threshold cycles in amplification of the target genes were compared to test the consistency of polymerase chain reaction (PCR) performance among individual factors including age groups, sex, family, the nail source, and by the size of the amplification segments.

resultsThe amplification of the target genes from nail DNA showed similar integrity and consistency between the nail sources, and among the serial collections. However, nail DNA from those in their forties showed earlier threshold cycles in amplification than those in their teens or seventies. Mitochondrial DNA (mtDNA) showed better DNA integrity and consistency in amplification of all three targets than did nuclear DNA (nucDNA). Over 9 kb of mtDNA was successfully amplified, and nested quantitative PCR showed reliable copy numbers (%) between the two loci. Reverse transcription PCR for mRNA and immunoblotting for GAPDH protein successfully reflected their corresponding amounts. Regarding the existence of RNA and protein in nails, more effective extraction and detection methods need to be set up to validate the feasibility in biomarker study.

conclusionsNail DNA might be a feasible intra-individual monitoring biomarker. Considering integrity and consistency in target amplification, mtDNA would be a better target for biomarker research than nucDNA.

Indexed as

AdultAgedAge FactorsBiomarkersChildDNADNA, MitochondrialDNA PrimersFeasibility StudiesFemaleGene AmplificationHumansMaleMiddle AgedNailsPilot ProjectsBiomarkersDNADNA, MitochondrialDNA PrimersBiomarks in nailCirculatory DNAIntra-individual monitoring

Identifiers

PMID22880155
PMCPMC3412986
OpenAlexW2052710446

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.