Evidence map›Paper›PMID 22880065›Full record

ArticlePloS one2012

The colitis-associated transcriptional profile of commensal Bacteroides thetaiotaomicron enhances adaptive immune responses to a bacterial antigen.

Jonathan J Hansen, Yong Huang, Daniel A Peterson, Laura Goeser, Ting-Jia Fan, Eugene B Chang, R Balfour Sartor

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Outlook on next-generation probiotics from the human gut.Cellular and molecular life sciences : CMLS · 2022
    Review
  8. Intestine-Specific NHE3 Deletion in Adulthood Causes Microbial Dysbiosis.Frontiers in cellular and infection microbiology · 2022
    Article
  9. Review
  10. Article
  11. Gut microbes · 2019
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Epithelial transport in inflammatory bowel diseases.Inflammatory bowel diseases · 2014
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Jonathan J HansenCenter for Gastrointestinal Biology and Disease, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States of America. jjhansen@med.unc.edu
Yong Huang
Daniel A Peterson
Laura Goeser
Ting-Jia Fan
Eugene B Chang
R Balfour Sartor
University of North Carolina at Chapel Hill · USUniversity of Chicago Medical Center · USJohns Hopkins University · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI LIU, CAMBRIAN YANGSHAO · 1990 to 2025
$29.8M
Colitis Induced by immune responses to luminal bacteria-mouseR01DK053347 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SARTOR, RYAN B · 1998 to 2012
$4.6M
Bacterial Stress Responses to Intestinal InflammationK08DK087896 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HANSEN, JONATHAN JAMES · 2010 to 2014
$766k
NCRR NIH HHS P40 RR18803NIDDK NIH HHS DK42086NIDDK NIH HHS K08 DK087896NIDDK NIH HHS P30 DK034987NIDDK NIH HHS P30 DK042086NIDDK NIH HHS P30 DK34987NIDDK NIH HHS R01 DK053347NIDDK NIH HHS R01 DK53347
6 · The paper itself

Abstract

backgroundInflammatory bowel diseases (IBD) may be caused in part by aberrant immune responses to commensal intestinal microbes including the well-characterized anaerobic gut commensal Bacteroides thetaiotaomicron (B. theta). Healthy, germ-free HLA-B27 transgenic (Tg) rats develop chronic colitis when colonized with complex gut commensal bacteria whereas non-transgenic (nTg) rats remain disease-free. However, the role of B. theta in causing disease in Tg rats is unknown nor is much known about how gut microbes respond to host inflammation.

methodsTg and nTg rats were monoassociated with a human isolate of B. theta. Colonic inflammation was assessed by histologic scoring and tissue pro-inflammatory cytokine measurement. Whole genome transcriptional profiling of B. theta recovered from ceca was performed using custom GeneChips and data analyzed using dChip, Significance Analysis of Microarrays, and Gene Set Enrichment Analysis (GSEA) software. Western Blots were used to determine adaptive immune responses to a differentially expressed B. theta gene.

resultsB. theta monoassociated Tg rats, but not nTg or germ-free controls, developed chronic colitis. Transcriptional profiles of cecal B. theta were significantly different in Tg vs. nTg rats. GSEA revealed that genes in KEGG canonical pathways involved in bacterial growth and metabolism were downregulated in B. theta from Tg rats with colitis though luminal bacterial concentrations were unaffected. Bacterial genes in the Gene Ontology molecular function "receptor activity", most of which encode nutrient binding proteins, were significantly upregulated in B. theta from Tg rats and include a SusC homolog that induces adaptive immune responses in Tg rats.

conclusionsB. theta induces colitis in HLA-B27 Tg rats, which is associated with regulation of bacterial genes in metabolic and nutrient binding pathways that may affect host immune responses. These studies of the host-microbial dialogue may lead to the identification of novel microbial targets for IBD therapies.

Indexed as

TranscriptomeAdaptive ImmunityAnimalsAntigens, BacterialBacterial ProteinsBacteroidesColitisColonColony Count, MicrobialCytokinesDown-RegulationGene Expression Regulation, BacterialGenes, BacterialHLA-B27 AntigenHumansInflammationAntigens, BacterialBacterial ProteinsCytokinesHLA-B27 AntigenInflammation MediatorsMembrane ProteinstonB protein, Bacteria

Identifiers

PMID22880065
PMCPMC3411805
OpenAlexW2048879110

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.