Evidence map›Paper›PMID 22879884›Full record

ArticlePloS one2012

Human endogenous retrovirus expression is inversely associated with chronic immune activation in HIV-1 infection.

Christopher E Ormsby, Devi Sengupta, Ravi Tandon, Steven G Deeks, Jeffrey N Martin, R Brad Jones, Mario A Ostrowski, Keith E Garrison, Joel A Vázquez-Pérez, Gustavo Reyes-Terán and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. AIDS alters the commensal plasma virome.Journal of virology · 2013
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Christopher E OrmsbyCenter for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Federal District, Mexico. christopher.ormsby@cieni.org.mx
Devi Sengupta
Ravi Tandon
Steven G Deeks
Jeffrey N Martin
R Brad Jones
Mario A Ostrowski
Keith E Garrison
Joel A Vázquez-Pérez
Gustavo Reyes-Terán
Douglas F Nixon
University of California, San Francisco · USUniversity of Toronto · CASan Francisco General Hospital · US

Funding

UCSF CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTEUL1RR024131 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSTON, S. CLAIBORNE · 2006 to 2011
$111.2M
Unsolicited R24 for the CFAR-Network of Integrated Clinical Sciences, CNICSR24AI067039 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Michael S. Saag · 2006 to 2026
$99.4M
Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Human Endogenous Retroelements in HIV ImmunopathogenesisR01AI076059 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2009 to 2017
$3.9M
The impact of early antiretroviral therapy on HIV persistence and inflammationR01AI087145 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2009 to 2010
$1.6M
Preventing the Establishment of Enfuvirtide-resistance in the Latent ReservoirK24AI069994 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEEKS, STEVEN GRANT · 2007 to 2016
$1.5M
An endogenous retroelement vaccine against HIV-1R56AI084113 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NIXON, DOUGLAS F · 2009 to 2009
$425k
NCRR NIH HHS UL1 RR024131NIAID NIH HHS 1 R24 AI067039-1NIAID NIH HHS AI087145NIAID NIH HHS AI76059NIAID NIH HHS AI84113NIAID NIH HHS K24 AI069994NIAID NIH HHS K24AI069994NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI076059NIAID NIH HHS R01 AI087145NIAID NIH HHS R24 AI067039NIAID NIH HHS R56 AI084113
6 · The paper itself

Abstract

Human endogenous retroviruses (HERV) are remnants of ancestral retroviral infections integrated into the germ line, and constitute approximately 8% of the genome. Several autoimmune disorders, malignancies, and infectious diseases such as HIV-1 are associated with higher HERV expression. The degree to which HERV expression in vivo results in persistent inflammation is not known. We studied the association of immune activation and HERV-K expression in 20 subjects with chronic, untreated progressive HIV-1 infection and 10 HIV-1 negative controls. The mean HERV-K gag and env RNA expression level in the HIV-1 infected cohort was higher than in the control group (p = 0.0003), and was negatively correlated with the frequency of activated CD38+HLA-DR+CD4+ T cells (Rho = -0.61; p = 0.01) and activated CD38+HLA-DR+CD8+ T cells (Rho = -0.51; p = 0.03). Although HIV-infected persons had higher levels of HERV-K RNA expression (as expected), the level of RNA expression was negatively associated with level of T cell activation. The mechanism for this unexpected association remains to be defined.

Indexed as

Gene Expression Regulation, ViralAdultCase-Control StudiesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesDemographyEndogenous RetrovirusesFemaleHIV-1HIV InfectionsHumansImmunityMaleMiddle AgedRNA, ViralRNA, Viral

Identifiers

PMID22879884
PMCPMC3413683
OpenAlexW2014463220

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.