Evidence map›Paper›PMID 22872868›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis.

Thomas J Lie, Kyle C Costa, Boguslaw Lupa, Suresh Korpole, William B Whitman, John A Leigh

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 124 citations in OpenAlex.

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  17. Interspecies Formate Exchange Drives Syntrophic Growth ofApplied and environmental microbiology · 2022
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Thomas J LieDepartment of Microbiology, University of Washington, Seattle WA 98195, USA.
Kyle C Costa
Boguslaw Lupa
Suresh Korpole
William B Whitman
John A Leigh
University of Washington · USUniversity of Georgia · USInstitute of Microbial Technology · IN

Funding

TRAINING IN MOLECULAR AND CELLULAR BIOLOGYT32GM007270 · NIGMS · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2020
$21.0M
Methanococcus maripaludis as an emerging model organismR24GM074783 · NIGMS · UNIVERSITY OF WASHINGTON · PI LEIGH, JOHN A · 2007 to 2010
$915k
NIGMS NIH HHS R24 GM074783NIGMS NIH HHS T32 GM007270NIGMS NIH HHS T32 GM07270
6 · The paper itself

Abstract

Despite decades of study, electron flow and energy conservation in methanogenic Archaea are still not thoroughly understood. For methanogens without cytochromes, flavin-based electron bifurcation has been proposed as an essential energy-conserving mechanism that couples exergonic and endergonic reactions of methanogenesis. However, an alternative hypothesis posits that the energy-converting hydrogenase Eha provides a chemiosmosis-driven electron input to the endergonic reaction. In vivo evidence for both hypotheses is incomplete. By genetically eliminating all nonessential pathways of H(2) metabolism in the model methanogen Methanococcus maripaludis and using formate as an additional electron donor, we isolate electron flow for methanogenesis from flux through Eha. We find that Eha does not function stoichiometrically for methanogenesis, implying that electron bifurcation must operate in vivo. We show that Eha is nevertheless essential, and a substoichiometric requirement for H(2) suggests that its role is anaplerotic. Indeed, H(2) via Eha stimulates methanogenesis from formate when intermediates are not otherwise replenished. These results fit the model for electron bifurcation, which renders the methanogenic pathway cyclic, and as such requires the replenishment of intermediates. Defining a role for Eha and verifying electron bifurcation provide a complete model of methanogenesis where all necessary electron inputs are accounted for.

Indexed as

Bacterial ProteinsElectronsFerredoxinsFormate DehydrogenasesGene DeletionHydrogenHydrogenaseMethaneMethanococcusModels, ChemicalMutationPlasmidsTime FactorsBacterial ProteinsFerredoxinsFormate DehydrogenasesHydrogenHydrogenaseMethane

Identifiers

PMID22872868
PMCPMC3458328
OpenAlexW2137858446

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.