ArticleMolecular genetics and genomics : MGG2012
Characterization of wheat DArT markers: genetic and functional features.
Article in Molecular genetics and genomics : MGG, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.
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Who cites it
28 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Genetic basis of qualitative and quantitative resistance to powdery mildew in wheat: from consensus regions to candidate genes.BMC genomics · 2013Pooled it
- Integration and imputation of GBS-derived and DArTseq-derived SNP markers in assessing genetic diversity of bread wheat genotypes.BMC genomics · 2026Article
- Integrated genome-wide association study (GWAS) and metabolomics identify genetic and metabolic drivers of stripe rust resistance in wheat from the Western Himalayas.Functional & integrative genomics · 2026Article
- Genome-wide analysis for root and leaf architecture traits associated with drought tolerance at the seedling stage in a highly ecologically diverse wheat population.Computational and structural biotechnology journal · 2024Article
- Genetic diversity of a Silybum marianum (L.) Gaertn. germplasm collection revealed by DNA Diversity Array Technology (DArTseq).PloS one · 2024Article
- Haplotype-Based Genome-Wide Association Analysis Using Exome Capture Assay and Digital Phenotyping Identifies Genetic Loci Underlying Salt Tolerance Mechanisms in Wheat.Plants (Basel, Switzerland) · 2023Article
- Article
- A new approach fits multivariate genomic prediction models efficiently.Genetics, selection, evolution : GSE · 2022Article
- Genetic mapping of adult-plant resistance genes to powdery mildew in triticale.Journal of applied genetics · 2022Article
- Identifying suitable tester for evaluating Striga resistant lines using DArTseq markers and agronomic traits.PloS one · 2021Article
- Toward the Genetic Basis and Multiple QTLs of Kernel Hardness in Wheat.Plants (Basel, Switzerland) · 2020Article
- QTL Mapping Using a High-Density Genetic Map to Identify Candidate Genes Associated With Metribuzin Tolerance in Hexaploid Wheat (Frontiers in plant science · 2020Article
- Characterizing Palestinian snake melon (Cucumis melo var. flexuosus) germplasm diversity and structure using SNP and DArTseq markers.BMC plant biology · 2018Article
- Regulation and Evolution of NLR Genes: A Close Interconnection for Plant Immunity.International journal of molecular sciences · 2018Review
- Mapping QTL for Root and Shoot Morphological Traits in a Durum Wheat ×International journal of genomics · 2017Article
- Genome wide identification of C1-2i zinc finger proteins and their response to abiotic stress in hexaploid wheat.Molecular genetics and genomics : MGG · 2016Article
- DArT Markers Effectively Target Gene Space in the Rye Genome.Frontiers in plant science · 2016Article
- Radiation hybrid maps of the D-genome of Aegilops tauschii and their application in sequence assembly of large and complex plant genomes.BMC genomics · 2015Article
- Genetic analysis of root morphological traits in wheat.Molecular genetics and genomics : MGG · 2015Article
- Identification of New Resistance Loci to African Stem Rust Race TTKSK in Tetraploid Wheats Based on Linkage and Genome-Wide Association Mapping.Frontiers in plant science · 2015Article
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9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Diversity array technology (DArT) markers are largely used for mapping, genetic diversity, and association mapping studies. For years, they have been used as anonymous genomic markers, as their sequences were not known. As the sequences of 2,000 wheat DArT clones are now available, this study was designed to analyze these sequences with bioinformatic approaches, and to study the genetic features of a subset of 291 markers positioned on the A and B genomes in three durum wheat genetic maps. A set of 1,757 non-redundant sequences was identified, and used as queries for similarity searches. Analysis of the genetic positions of markers corresponding to nearly identical sequences indicates that redundancy of sequences is one of the factors that explains the clustering of these markers in specific genomic regions. Of a total of 1,124 DArT clones (64 %) that represent putatively expressed sequences, putative functions are proposed for more than 700 of them. Of note, many clones correspond to genes that are related to disease resistance, as characterized by leucine-rich repeat domains, and 40 of these clones are positioned in the three genetic maps presented in this study. Finally, DArT markers have been used to find syntenic regions in the Brachypodium and rice genomes. In conclusion, the analyses herein presented contribute to explain the main features of DArT markers observed in genetic maps, as clustering in short chromosome regions. Moreover, the attribution of putative gene functions for more than 700 sequences makes these markers an optimal tool for collinearity studies or for the identification of candidate genes.
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