Evidence map›Paper›PMID 22872099›Full record

ArticleEuropean journal of human genetics : EJHG2013

FTO levels affect RNA modification and the transcriptome.

Tea Berulava, Matthias Ziehe, Ludger Klein-Hitpass, Emil Mladenov, Jürgen Thomale, Ulrich Rüther, Bernhard Horsthemke

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 70 citations in OpenAlex.

  1. Trial
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  9. Novel Insights into The Roles of NInternational journal of biological sciences · 2023
    Review
  10. Epitranscriptome: Review of Top 25 Most-Studied RNA Modifications.International journal of molecular sciences · 2022
    Review
  11. Article
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  13. Erasing mNeurobiology of stress · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Tea BerulavaInstitut für Humangenetik, Universitätsklinikum Essen, Essen, Germany.
Matthias Ziehe
Ludger Klein-Hitpass
Emil Mladenov
Jürgen Thomale
Ulrich Rüther
Bernhard Horsthemke
Institut für Medizinische Informatik, Biometrie und Epidemiologie · DEEssen University Hospital · DEHeinrich Heine University Düsseldorf · DEHumboldt-Universität zu Berlin · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A block of single-nucleotide polymorphisms within intron 1 of the FTO (fat mass and obesity associated) gene is associated with variation in body weight. Previous works suggest that increased expression of FTO, which encodes a 2-oxoglutarate-dependent nucleic acid demethylase, leads to increased body weight, although the underlying mechanism has remained unclear. To elucidate the function of FTO, we examined the consequences of altered FTO levels in cultured cells and murine brain. Here we show that a knockdown of FTO in HEK293 cells affects the transcripts levels of genes involved in the response to starvation, whereas overexpression of FTO affects the transcript levels of genes related to RNA processing and metabolism. Subcellular localization of FTO further strengthens the latter notion. Using immunocytochemistry and confocal laser scanning microscopy, we detected FTO in nuclear speckles and--to a lesser and varying extent--in the nucleoplasm and nucleoli of HEK293, HeLa and MCF-7 cells. Moreover, RNA modification analyses revealed that loss of Fto affects the 3-methyluridine/uridine and pseudouridine/uridine ratios in total brain RNA. We conclude that altered levels of FTO have multiple and diverse consequences on RNA modifications and the transcriptome.

Indexed as

RNA Processing, Post-TranscriptionalAlpha-Ketoglutarate-Dependent Dioxygenase FTOAnimalsBrainCell LineCell Nucleus StructuresFemaleGene Expression RegulationGene Knockdown TechniquesHumansMaleMiceMice, KnockoutMixed Function OxygenasesOxo-Acid-LyasesProteins3-methyluridineAlpha-Ketoglutarate-Dependent Dioxygenase FTOFTO protein, humanFTO protein, mouseMixed Function OxygenasesOxo-Acid-LyasesProteinsRNA, MessengerUridine

Identifiers

PMID22872099
PMCPMC3573201
OpenAlexW1981857432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.