Evidence map›Paper›PMID 22871458›Full record

Trial reportMechanisms of ageing and development

Genotype×age interaction in human transcriptional ageing.

Jack W Kent, Harald H H Göring, Jac C Charlesworth, Eugene Drigalenko, Vincent P Diego, Joanne E Curran, Matthew P Johnson, Thomas D Dyer, Shelley A Cole, Jeremy B M Jowett and 6 more

Abstract readClinical TrialTwin Study
In one paragraph

Trial report in Mechanisms of ageing and development. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The RNA world of human ageing.Human genetics · 2018
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Genetic basis of neurocognitive decline and reduced white-matter integrity in normal human brain aging.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Jack W KentDepartment of Genetics, Texas Biomedical Research Institute, San Antonio, TX 78245, USA. jkent@txbiomedgenetics.org
Harald H H Göring
Jac C Charlesworth
Eugene Drigalenko
Vincent P Diego
Joanne E Curran
Matthew P Johnson
Thomas D Dyer
Shelley A Cole
Jeremy B M Jowett
Michael C Mahaney
Anthony G Comuzzie
Laura Almasy
Eric K Moses
John Blangero
Sarah Williams-Blangero
Texas Biomedical Research Institute · USBaker Heart and Diabetes Institute · AUUniversity of Tasmania · AUUniversity of Western Australia · AU

Funding

PEDIGREE ANALYSIS OF LIPOPROTEIN PHENOTYPESP01HL045522 · NHLBI · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI ALMASY, LAURA A. · 1991 to 2012
$27.6M
Quantitative Trait Locus Mapping in Human PedigreesR37MH059490 · NIMH · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2001 to 2010
$6.8M
EXTRAMULAR RESEARCH FACILITIES CONSTRUCTIONC06RR017515 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 2003 to 2003
$3.1M
Genetic Determinants of Human Transcriptional AgingR01AG031277 · NIA · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI WILLIAMS-BLANGERO, SARAH A. · 2008 to 2012
$2.7M
High Performance Computing System for Human GenomicsS10RR029392 · NCRR · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI BLANGERO, JOHN · 2010 to 2010
$2.1M
QUANTITATIVE TRAIT LOCUS MAPPING IN HUMAN PEDIGREESR01MH059490 · NIMH · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI BLANGERO, JOHN · 1998 to 2000
$426k
MOLECULAR AND BIOCHEMICAL GENETICS LABORATORY RENOVATIONC06RR013556 · NCRR · SOUTHWEST FOUNDATION FOR BIOMEDICAL RES · PI SHADE, ROBERT E · 1998 to 1998
–
NCRR NIH HHS C06 RR013556NCRR NIH HHS C06 RR017515NCRR NIH HHS RR013556NCRR NIH HHS RR017515NCRR NIH HHS S10 RR029392NHLBI NIH HHS HL045522NHLBI NIH HHS P01 HL045522NIA NIH HHS AG031277NIA NIH HHS R01 AG031277NIMH NIH HHS MH059490NIMH NIH HHS R01 MH059490NIMH NIH HHS R37 MH059490
6 · The paper itself

Abstract

Individual differences in biological ageing (i.e., the rate of physiological response to the passage of time) may be due in part to genotype-specific variation in gene action. However, the sources of heritable variation in human age-related gene expression profiles are largely unknown. We have profiled genome-wide expression in peripheral blood mononuclear cells from 1240 individuals in large families and found 4472 human autosomal transcripts, representing ~4349 genes, significantly correlated with age. We identified 623 transcripts that show genotype by age interaction in addition to a main effect of age, defining a large set of novel candidates for characterization of the mechanisms of differential biological ageing. We applied a novel SNP genotype × age interaction test to one of these candidates, the ubiquilin-like gene UBQLNL, and found evidence of joint cis-association and genotype by age interaction as well as trans-genotype by age interaction for UBQLNL expression. Both UBQLNL expression levels at recruitment and cis genotype are associated with longitudinal cancer risk in our study cohort.

Indexed as

GenotypeMexican AmericansAdultAgedAge FactorsAgingChildChild, PreschoolFemaleFollow-Up StudiesGene Expression RegulationGenome-Wide Association StudyHumansInfantInfant, NewbornMale

Identifiers

PMID22871458
PMCPMC3541784
OpenAlexW2085339104

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.