Evidence map›Paper›PMID 22869088›Full record

ArticleEpigenetics2012

Characterization of CpG island DNA methylation of impairment-related genes in a rat model of cognitive aging.

Rebecca P Haberman, Caitlin K Quigley, Michela Gallagher

Open access · hybridAbstract read
In one paragraph

Article in Epigenetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Selective lowering of synapsins induced by oligomeric α-synuclein exacerbates memory deficits.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Rebecca P HabermanDepartment of Psychological and Brain Sciences, The Johns Hopkins University, Baltimore, MD, USA. rahabs@jhu.edu
Caitlin K Quigley
Michela Gallagher
University of Baltimore · US

Funding

TRANSCRIPTIONAL MECHANISMS OF HIPPOCAMPAL AGINGP01AG009973 · NIA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI JAMES J KNIERIM · 1991 to 2026
$52.4M
NIA NIH HHS P01 AG009973NIA NIH HHS P01AG09973
6 · The paper itself

Abstract

Cognitive abilities, particularly memory formation, vary substantially in the elderly, with some individuals exhibiting dramatic decline with age while others maintain function well into late life. Epigenetic modifications suggest an intriguing mechanism to account for the range of cognitive outcomes in aging as they are responsive to environmental influences and affect gene transcription in cognitively relevant brain regions. Leveraging a well-characterized rat model of neurocognitive aging that recapitulates the range of outcomes seen in humans, we previously identified gene expression profiles in the CA3 subregion of the hippocampus that distinguish between young and aged subjects as well as between impaired and preserved spatial memory function. To investigate the influence of epigenetics on these profiles, we examined genomic CpG DNA methylation in the promoter regions of three neurophysiologically relevant genes (Gabra5, Hspa5 and Syn1) whose expression levels decrease with age and correlate with spatial memory performance. Consistent with mRNA decreases, DNA methylation increased in aged rats relative to young in CpG dense regions of all target promoters examined. However, no correlation with cognition was found. Focused analysis of the Gabra5 gene found that methylation changes were limited to the CpG island and varied substantially across individual CpGs. Methylation at one CpG correlated with learning and demonstrated a significant difference between memory impaired aged rats and those with intact learning. These data provide evidence that broad age-dependent DNA methylation changes occur in CpG dense promoter regions of cognitively relevant genes but suggest that methylation at single CpGs may be more pertinent to individual cognitive differences.

Indexed as

CpG IslandsDNA MethylationAgingAnimalsCognition DisordersDisease Models, AnimalEndoplasmic Reticulum Chaperone BiPEpigenesis, GeneticHeat-Shock ProteinsMaleMaze LearningMemoryPromoter Regions, GeneticRatsRats, Long-EvansReceptors, GABA-AEndoplasmic Reticulum Chaperone BiPGabra5 protein, ratGRP78 protein, ratHeat-Shock ProteinsHSPA5 protein, humanReceptors, GABA-ARNA, MessengerSynapsins

Identifiers

PMID22869088
PMCPMC3515010
OpenAlexW1977801544

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.