Evidence map›Paper›PMID 22868767›Full record

ArticleActa crystallographica. Section D, Biological crystallography2012

Proline: Mother Nature's cryoprotectant applied to protein crystallography.

Travis A Pemberton, Brady R Still, Emily M Christensen, Harkewal Singh, Dhiraj Srivastava, John J Tanner

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 36 citations in OpenAlex.

  1. Identification of essential genes inMicrobial genomics · 2023
    Article
  2. Article
  3. Article
  4. The Multifaceted Roles of Proline in Cell Behavior.Frontiers in cell and developmental biology · 2021
    Review
  5. Article
  6. Role of Proline in Pathogen and Host Interactions.Antioxidants & redox signaling · 2019
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Practical macromolecular cryocrystallography.Acta crystallographica. Section F, Structural biology communications · 2015
    Review
  12. Article
  13. Article
  14. Article
  15. Proline mechanisms of stress survival.Antioxidants & redox signaling · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Travis A PembertonDepartment of Chemistry, University of Missouri-Columbia, Columbia, MO 65211, USA.
Brady R Still
Emily M Christensen
Harkewal Singh
Dhiraj Srivastava
John J Tanner
University of Missouri · US

Funding

Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI EISENBERG, DAVID · 2001 to 2011
$28.2M
Substrate Channeling and Communication in Proline Metabolic EnzymesR01GM065546 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI Donald F Becker, JOHN J TANNER · 2002 to 2026
$5.0M
NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS GM065546NIGMS NIH HHS R01 GM065546
6 · The paper itself

Abstract

L-Proline is one of Mother Nature's cryoprotectants. Plants and yeast accumulate proline under freeze-induced stress and the use of proline in the cryopreservation of biological samples is well established. Here, it is shown that L-proline is also a useful cryoprotectant for protein crystallography. Proline was used to prepare crystals of lysozyme, xylose isomerase, histidine acid phosphatase and 1-pyrroline-5-carboxylate dehydrogenase for low-temperature data collection. The crystallization solutions in these test cases included the commonly used precipitants ammonium sulfate, sodium chloride and polyethylene glycol and spanned the pH range 4.6-8.5. Thus, proline is compatible with typical protein-crystallization formulations. The proline concentration needed for cryoprotection of these crystals is in the range 2.0-3.0 M. Complete data sets were collected from the proline-protected crystals. Proline performed as well as traditional cryoprotectants based on the diffraction resolution and data-quality statistics. The structures were refined to assess the binding of proline to these proteins. As observed with traditional cryoprotectants such as glycerol and ethylene glycol, the electron-density maps clearly showed the presence of proline molecules bound to the protein. In two cases, histidine acid phosphatase and 1-pyrroline-5-carboxylate dehydrogenase, proline binds in the active site. It is concluded that L-proline is an effective cryoprotectant for protein crystallography.

Indexed as

1-Pyrroline-5-Carboxylate DehydrogenaseAcid PhosphataseAldose-Ketose IsomerasesAnimalsChickensCryoprotective AgentsCrystallizationCrystallography, X-RayEgg WhiteHistidineHumansHydrogen-Ion ConcentrationMuramidaseProlineProtein BindingProteins1-Pyrroline-5-Carboxylate DehydrogenaseAcid PhosphataseAldose-Ketose IsomerasesCryoprotective AgentsHistidineMuramidaseProlineProteinsxylose isomerase

Identifiers

PMID22868767
PMCPMC3413213
OpenAlexW2090536921

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.