Evidence map›Paper›PMID 22864914›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Circadian changes in long noncoding RNAs in the pineal gland.

Steven L Coon, Peter J Munson, Praveen F Cherukuri, David Sugden, Martin F Rath, Morten Møller, Samuel J H Clokie, Cong Fu, Mary E Olanich, Zoila Rangel and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Thousands of oscillating LncRNAs in the mouse testis.Computational and structural biotechnology journal · 2024
    Article
  3. Article
  4. Review
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  7. Article
  8. Article
  9. Oscillating lncRNATheranostics · 2021
    Article
  10. Review
  11. Article
  12. Article
  13. Role of Non-Coding RNAs in Lung Circadian Clock Related Diseases.International journal of molecular sciences · 2020
    Review
  14. Article
  15. Article
  16. Review
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 4 countries.

Steven L CoonSection on Neuroendocrinology, Program in Developmental Endocrinology and Genetics, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Peter J Munson
Praveen F Cherukuri
David Sugden
Martin F Rath
Morten Møller
Samuel J H Clokie
Cong Fu
Mary E Olanich
Zoila Rangel
Thomas Werner
NISC Comparative Sequencing Program
James C Mullikin
David C Klein
National Institutes of Health · USUniversity of Michigan · USCenter for Information Technology · USEunice Kennedy Shriver National Institute of Child Health and Human Development · USUniversity of Copenhagen · DKKing's College London · GB

Funding

Inter- and Intra-Species Comparative SequencingZIBHG000196 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI THOMAS, JAMES · 2009 to 2025
$177.6M
Comparative Genomics Unit ResearchZIAHG200330 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MULLIKIN, JAMES C · 2009 to 2022
$17.9M
Statistical And Computational Methods For Gene Expression and Proteomic AnalysisZIACT000266 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI MUNSON, PETER J · 2009 to 2016
$4.2M
Pineal Regulation: Developmental and Circadian Changes in the Transcriptome ZIAHD008836 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI KLEIN, DAVID · 2009 to 2015
$2.4M
Pineal Regulation: Molecular basis of developmentZIAHD008837 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI KLEIN, DAVID · 2009 to 2015
$1.8M
Biotechnology and Biological Sciences Research CouncilIntramural NIH HHS
6 · The paper itself

Abstract

Long noncoding RNAs (lncRNAs) play a broad range of biological roles, including regulation of expression of genes and chromosomes. Here, we present evidence that lncRNAs are involved in vertebrate circadian biology. Differential night/day expression of 112 lncRNAs (0.3 to >50 kb) occurs in the rat pineal gland, which is the source of melatonin, the hormone of the night. Approximately one-half of these changes reflect nocturnal increases. Studies of eight lncRNAs with 2- to >100-fold daily rhythms indicate that, in most cases, the change results from neural stimulation from the central circadian oscillator in the suprachiasmatic nucleus (doubling time = 0.5-1.3 h). Light exposure at night rapidly reverses (halving time = 9-32 min) levels of some of these lncRNAs. Organ culture studies indicate that expression of these lncRNAs is regulated by norepinephrine acting through cAMP. These findings point to a dynamic role of lncRNAs in the circadian system.

Indexed as

AnimalsBucladesineCircadian RhythmComputational BiologyGene Expression RegulationNervous SystemNorepinephrinePineal GlandRatsRats, Sprague-DawleyRNA, UntranslatedSynapsesBucladesineNorepinephrineRNA, Untranslated

Identifiers

PMID22864914
PMCPMC3421215
OpenAlexW2035111432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.