Evidence map›Paper›PMID 22863803›Full record

ArticleJournal of molecular biology2012

The structure of myristoylated Mason-Pfizer monkey virus matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in its membrane binding.

Jan Prchal, Pavel Srb, Eric Hunter, Tomáš Ruml, Richard Hrabal

Abstract read
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
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  6. Atomic view of the HIV-1 matrix lattice; implications on virus assembly and envelope incorporation.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jan PrchalLaboratory of NMR Spectroscopy, Institute of Chemical Technology, Prague, Technická 5, 16628 Prague, Czech Republic.
Pavel Srb
Eric Hunter
Tomáš Ruml
Richard Hrabal

Funding

GENETICS OF PRIMATE D TYPE RETROVIRUSESR01CA027834 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HUNTER, ERIC · 1985 to 2011
$3.6M
GENETICS OF PRIMATE D TYPE RETROVIRUSESR37CA027834 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HUNTER, ERIC · 1991 to 1999
–
NCI NIH HHS CA 27834NCI NIH HHS R01 CA027834NCI NIH HHS R37 CA027834
6 · The paper itself

Abstract

We determined the solution structure of myristoylated Mason-Pfizer monkey virus matrix protein by NMR spectroscopy. The myristoyl group is buried inside the protein and causes a slight reorientation of the helices. This reorientation leads to the creation of a binding site for phosphatidylinositols. The interaction between the matrix protein and phosphatidylinositols carrying C(8) fatty acid chains was monitored by observation of concentration-dependent chemical shift changes of the affected amino acid residues, a saturation transfer difference experiment and changes in (31)P chemical shifts. No differences in the binding mode or affinity were observed with differently phosphorylated phosphatidylinositols. The structure of the matrix protein-phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P(2)] complex was then calculated with HADDOCK software based on the intermolecular nuclear Overhauser enhancement contacts between the ligand and the matrix protein obtained from a (13)C-filtered/(13)C-edited nuclear Overhauser enhancement spectroscopy experiment. PI(4,5)P(2) binding was not strong enough for triggering of the myristoyl-switch. The structural changes of the myristoylated matrix protein were also found to result in a drop in the oligomerization capacity of the protein.

Indexed as

Binding SitesCell MembraneMason-Pfizer monkey virusMyristatesNuclear Magnetic Resonance, BiomolecularPhosphatidylinositol 4,5-DiphosphateViral Matrix ProteinsMyristatesPhosphatidylinositol 4,5-DiphosphateViral Matrix Proteins

Identifiers

PMID22863803
PMCPMC3579217

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.